Clone FMO06072 Report

Search the DGRC for FMO06072

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3548-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06072.5prime Sequence

354 bp (332 high quality bases) assembled on 2008-09-15

> FMO06072.5prime
CAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCTCCTCTCCG
CCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCGCAGAAGTC
AAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGATGCGGCCG
AGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGGGCACGCGC
AAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTGCTCCTTGA
GGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGATCGTGTACGTCT
AGAGCATAAAGGCCTTGCGTCTGGCCTGGTCTTTATCACCAAGCAGTTCA
CTGC

FMO06072.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 102..448 9..354 1560 96.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24600048..24600370 9..331 1525 98.1 Plus
Blast to na_te.dros performed on 2014-11-28 22:00:29 has no hits.

FMO06072.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:48 Download gff for FMO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..448 9..354 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:57:50 Download gff for FMO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 83..429 9..354 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:13 Download gff for FMO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..448 9..354 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:13 Download gff for FMO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24600048..24600394 9..354 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:48 Download gff for FMO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20487571..20487917 9..354 95   Plus