Clone FMO06076 Report

Search the DGRC for FMO06076

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5721-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06076.5prime Sequence

233 bp (231 high quality bases) assembled on 2008-09-15

> FMO06076.5prime
CAGTCGACATGGCCAAGGTTATATCGCAGGACACCTTCGACGATGTTGTG
AAGGAGAACGTTGTGGAGTTCTCGATGACTCCTTCGGAGGCGAAAGAAGA
GACCATCAAGCAATTCGAGGCACAGGGCATCAACCTGGCCAACATTATCA
AGGACCTGTCCGTCAATCCGCAAACCGGCCAACCTGTCATCAACGAAACG
GTGGACAAGATCAAGGAGCACATTGGCCTAAAA

FMO06076.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5721-RA 1601 CG5721-RA 100..325 8..233 1115 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18183873..18183991 126..8 595 100 Minus
2R 25286936 2R 18183711..18183821 233..123 540 99.1 Minus
Blast to na_te.dros performed on 2014-11-28 21:26:19 has no hits.

FMO06076.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:37 Download gff for FMO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5721-RA 94..320 1..229 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:08 Download gff for FMO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5721-RA 117..343 1..229 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:44 Download gff for FMO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5721-RA 94..320 1..229 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:44 Download gff for FMO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18183715..18183818 126..229 99 <- Minus
2R 18183874..18183997 1..125 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:37 Download gff for FMO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14071220..14071323 126..229 99 <- Minus
arm_2R 14071379..14071502 1..125 97   Minus