Clone FMO06077 Report

Search the DGRC for FMO06077

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:77
Vector:pMK33-CFH-BD
Associated Gene/TranscriptImpL2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06077.5prime Sequence

356 bp (355 high quality bases) assembled on 2008-09-15

> FMO06077.5prime
CAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGCTGTTCGGC
AGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGACGATAGCAA
CGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACGCAACCGAG
CCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGACGAAGCTG
CAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATGATGGGCTC
CCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCGCTCGGAGC
TCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCAGTGCCCTT
GTGCGC

FMO06077.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1080 9..356 1725 99.7 Plus
ImpL2-RC 989 CG15009-RC 71..418 9..356 1725 99.7 Plus
ImpL2-RB 1651 CG15009-RB 733..1080 9..356 1725 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4225356..4225703 356..9 1725 99.7 Minus
Blast to na_te.dros performed on 2014-11-28 19:43:56 has no hits.

FMO06077.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:15 Download gff for FMO06077.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1080 2..356 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:10 Download gff for FMO06077.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 695..1048 2..356 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:35 Download gff for FMO06077.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1080 2..356 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:35 Download gff for FMO06077.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4225356..4225709 1..356 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:15 Download gff for FMO06077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4225356..4225709 1..356 98   Minus