FMO06078.5prime Sequence
635 bp (634 high quality bases) assembled on 2008-09-15
> FMO06078.5prime
CAGTCGACATGACTACCGCCTTGTATTTGCCCGAGGAGAACATTGATATG
ATTGCTGCCACCTCGGTGCTGCAGCAGCAGGCGGCGGACATCCGCACCAG
GACGATCAACTGGGCTTCGTACATGCAGTCGCAGATGATCAGCGAGGAGG
ACTACAAGGCAATCAGCGCGTTGGACAAGTCACGTGCCAGCTTCTTGGCC
CAGAACTCCAGCCAGGTGGTGAAGACGCTGCTTAATCTGGTTTCGCATCT
GTCGAAGGACTCCACCATTCAGTACATCCTTGTGCTGCTCGACGATTTGC
TGCAGGAGGATCGCTCCCGTGTGGATCTATTCCATGACACAGCCGGCAAG
CTGAAGCAGTGCATCTGGGGTCCGTTCCTGAACCTGCTGAACCGTCAGGA
TGGCTTTATTGTCAACATGTCGTCGCGCATCCTGGCCAAATTCGCCTGCT
GGGGCCATGAGACCATGCCCAAGTCCGACCTGAACTTCTATCTGCAGTTC
CTGAAGGATCAGCTGGCCAGCAATAACAACGAATACATCCAGTCGGTGGC
CCGGTGCCTGCAGATGATGCTCCGTGTGGATGAGTATCGATTTGCCTTTG
TGGGAGTCGACGGAATCAGCACTCTGATCCCGTAT
FMO06078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 161..782 | 9..630 | 3110 | 100 | Plus |
| VhaSFD-RD | 2247 | CG17332-RD | 161..782 | 9..630 | 3110 | 100 | Plus |
| VhaSFD-RA | 2154 | CG17332-RA | 161..782 | 9..630 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16727010..16727489 | 524..45 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 16724888..16724993 | 630..525 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 16727630..16727666 | 45..9 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:02:59 has no hits.
FMO06078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:09 Download gff for
FMO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 153..786 | 1..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:12 Download gff for
FMO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RD | 152..785 | 1..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:52 Download gff for
FMO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 153..786 | 1..635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:52 Download gff for
FMO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16724884..16724993 | 525..635 | 99 | <- | Minus |
| 2L | 16727010..16727488 | 46..524 | 100 | <- | Minus |
| 2L | 16727630..16727672 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:09 Download gff for
FMO06078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16724884..16724993 | 525..635 | 99 | <- | Minus |
| arm_2L | 16727010..16727488 | 46..524 | 100 | <- | Minus |
| arm_2L | 16727630..16727672 | 1..45 | 91 | | Minus |
