FMO06079.5prime Sequence
594 bp (594 high quality bases) assembled on 2008-09-15
> FMO06079.5prime
CAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCTTCATCGGT
TTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTCTCGAAGAG
GGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATATTCCGTGGT
CGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTGACCTGCAC
TTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTGCGGGATCC
CCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGGCATCAAGA
ACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAGGATTCAAC
GATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGATCGTCGCTG
GAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCTCAAAATCC
GACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGGTGGACTTC
GTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTAAAGGACTT
CTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTTTG
FMO06079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9c1-RA | 1743 | CG3616-RA | 123..709 | 8..594 | 2935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24631422..24631831 | 185..594 | 2050 | 100 | Plus |
| 2R | 25286936 | 2R | 24631185..24631364 | 8..187 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:05 has no hits.
FMO06079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:48 Download gff for
FMO06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9c1-RA | 118..709 | 1..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:13 Download gff for
FMO06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9c1-RA | 106..697 | 1..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:48 Download gff for
FMO06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9c1-RA | 118..709 | 1..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:48 Download gff for
FMO06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24631180..24631364 | 1..187 | 97 | -> | Plus |
| 2R | 24631425..24631831 | 188..594 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:48 Download gff for
FMO06079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20518703..20518887 | 1..187 | 97 | -> | Plus |
| arm_2R | 20518948..20519354 | 188..594 | 100 | | Plus |
