Clone FMO06081 Report

Search the DGRC for FMO06081

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:81
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15478-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06081.5prime Sequence

493 bp (492 high quality bases) assembled on 2008-09-09

> FMO06081.5prime
GCCATGCTCAACGGGAGGAGCAGTAGCGTCAGCAGGGGTAACCACCAGCA
ATGCCACGCCCAGTGCGCCTAGTACGCCCACAACAGCAGCAGCAGCAGCA
GCAGCAGCGGCGGCAGCAGCATCTGCTGCAGATCCAACCGCAACGAATCC
GCAAAATCCGCAGCAACGCAGCAAGAGCAACATCCATGAGCTAAGAAATC
AGGACTACGTCAGTCGTTTAATGGCAGCCACACCACCGTATTTGTATTCC
GCACCCGTGGGACCAAATAATTTCTTTTTCAGCGATATGCTGCGTTCCTT
GGTGCAAGCGCGAAATAATGAGACGGCGCGTGTCTTGCAGCTGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGGCACAGCAACAACAGCAGCAGCAACAT
CAGGCCGCCTTGGTGAGGCGGCCAAGAAAACGCTCCTGGTCGCATCGTCC
ATACTACGAGCAATTGCGGGAGCGACGCGATGCAGAGGAGAAG

FMO06081.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15478-RB 1855 CG15478-RB 202..694 1..493 2465 100 Plus
CG15478-RA 1851 CG15478-RA 198..690 1..493 2465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7713944..7714436 493..1 2465 100 Minus
Blast to na_te.dros performed 2014-11-28 19:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 4735..4847 112..227 106 58.8 Plus

FMO06081.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:13 Download gff for FMO06081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 198..690 1..493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:02:55 Download gff for FMO06081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 194..686 1..493 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:02 Download gff for FMO06081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15478-RA 198..690 1..493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:02 Download gff for FMO06081.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7713944..7714436 1..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:13 Download gff for FMO06081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7607977..7608469 1..493 100   Minus