Clone FMO06083 Report

Search the DGRC for FMO06083

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:83
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG8929-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06083.5prime Sequence

381 bp (381 high quality bases) assembled on 2008-09-09

> FMO06083.5prime
GCGCGCCGAACTGAATCCAAAACTGCACATGGACAGGCAGCCGACAGCTG
CCCGCATAACAGATCCCTCATTACCCGCTGGAAAGCGACGCGAGATCGAC
AACGTGATGAAGAAGGCGCGCGCCAACACCACCAACGATTATTGGGACAA
GAAGCTGATCGAGGCCGAGGAGAAGGATCCAAACCGATGGCGCCACACGG
GCTACAAGAAGATGTACATCCAGGGGGAGAGCAGCTCTGGAGAGAGCGAA
CGCGACGGTCGCGAAGGTCGTGAGGGTGGAGCACCGCCCTACGGTCGTTA
TCCGCCCACAGGTGGACCGCCGCCAGGTCCACCGCCTCCGTCGCAGCGTT
ACGGACGCTCTCGTTCGCCGCACTCGCGCAG

FMO06083.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8929-RA 2972 CG8929-RA 804..1184 1..381 1875 99.5 Plus
CG8929-RB 2499 CG8929-RB 331..711 1..381 1875 99.5 Plus
CG8929-RC 2231 CG8929-RC 125..443 63..381 1565 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20328324..20328645 60..381 1580 99.4 Plus
2R 25286936 2R 20328073..20328134 1..62 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:32:54 has no hits.

FMO06083.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:31 Download gff for FMO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8929-RB 331..711 1..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:02:45 Download gff for FMO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8929-RA 807..1187 1..381 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:50 Download gff for FMO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8929-RB 331..711 1..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:50 Download gff for FMO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20328073..20328134 1..62 100 -> Plus
2R 20328327..20328645 63..381 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:31 Download gff for FMO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16215578..16215639 1..62 100 -> Plus
arm_2R 16215832..16216150 63..381 99   Plus