FMO06084.5prime Sequence
394 bp (394 high quality bases) assembled on 2008-09-15
> FMO06084.5prime
CAGTCGTCATGGGTTCCGTCAACTGCAAGGAGTACAAGACCACGGGCAGC
ACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCCTACCAGTC
CAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGAAGAGTCTT
CGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCAGAGTTACG
GATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAGGACACCCG
CGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGGTGCTAAGT
GCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTTTGGGTCGT
GTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAATACGG
FMO06084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 301..686 | 9..394 | 1915 | 99.7 | Plus |
| CG4199-RH | 2521 | CG4199-RH | 466..851 | 9..394 | 1915 | 99.7 | Plus |
| CG4199-RG | 2317 | CG4199-RG | 262..647 | 9..394 | 1915 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2068105..2068430 | 394..69 | 1600 | 99.4 | Minus |
| X | 23542271 | X | 2071358..2071426 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:50 has no hits.
FMO06084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:50 Download gff for
FMO06084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..647 | 9..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:03 Download gff for
FMO06084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RC | 360..745 | 9..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:14 Download gff for
FMO06084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..647 | 9..394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:14 Download gff for
FMO06084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2068105..2068423 | 76..394 | 99 | <- | Minus |
| X | 2071360..2071426 | 9..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:50 Download gff for
FMO06084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1962138..1962456 | 76..394 | 99 | <- | Minus |
| arm_X | 1965393..1965459 | 9..75 | 100 | | Minus |
