FMO06085.5prime Sequence
1159 bp (1044 high quality bases) assembled on 2008-09-15
> FMO06085.5prime
CAGTCGACATGGACCGGGCTAGTCTATATTTTATGAGCAAGGATGATAAG
AACACCTTCGACTTCGACGAGACCTTACCTTCGCTCCCGCTGCCAGAGCT
TAGGGACACCATGGAGCGCTACTACAGCTGCATCCAGCCATTCGGGACCA
AGGAGGAGTTGGCCCAGGCTCGCAAGACTATTGATGAGTTCCAAAACGGA
GTGGGAGCCCAGCTGCACGAACAGCTCAAGAAGCGGGCGGCCGGCATGAG
GAACTGGCTGGGCACCTGGTGGGAGGACTACGGATATCACCTGATTCGGA
TGCCGCTGCTGCCCTACCAGCTCATGGTCATGCCCTCGCAATTGGAAATG
GTGGGCGTGCCGGAGACACCGGAGTACATGCTGAAGAGTCTGGCGCGCCA
CATTCACCACTCGCTGGAGTTTTGGGATCTGACTAGAAAGTCCAGCATCA
AACCGCTCTCCTCGAACGGCGGTAAAATAAAGTACTCCTCCGCGCTGTAC
AAGCACTTCTTCTCCACGTGCCGTGTGCCAGGCGAGGAGCAGGATCATAT
AGAGAAGCATTTTCTCACCAAGGATGAGGGCAAAACGCCGAGTCACATGC
TTATTTCCGGCAAGGGACGTCAGTTCATCTTCGATTGTGTGCACGAGGAC
GACACTATCCTATCGGCTCCCGAAATCCTCGTGGCCCTGCAAAGAGTGCG
CAGCATCCTCGACTACGAGCCGTTGGGCGATTGTGTGCCCACCCTGAGCC
ATGACGAACGCTCCACGTGGGCACGCAACCGCAACCGTTTGAGGGAAATC
TCAGTTGCAAACAAGGAGACGCTGCTTCTGGTGGAGAGCGCATGTATGGA
GATCTGCTGGTACGAGCAATCGCCCAAGGACTACGAGGAGTCCTGCCAGC
TGGGTCTCTACGGTGATCTCCATTCCCGCTGGGCAGACGCAGCAGCAGCA
TCATCGGCTTCCGCAACGGACGCTGCACTGGACGGTGAGCCACAGCTGCT
ACGATGGCACGGTCAGCATAGGTTACGCCCACATTCATGCACTGACTTTC
TGGAGGTGCCGAGCCGAACTGGGTCAAAGGCGAAAAGCATGTTTGGAGGT
CAGAAGCTGCACTCCACTTGGATGAACGCCTCAGAACAGAGAATCAAGGC
GGGCAAAGA
FMO06085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 207..1334 | 8..1125 | 5100 | 97.6 | Plus |
| CG12428-RA | 2357 | CG12428-RA | 155..1282 | 8..1125 | 5100 | 97.6 | Plus |
| CG12428-RE | 2413 | CG12428-RE | 211..1338 | 8..1125 | 5100 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27704732..27705391 | 1041..383 | 3050 | 98.5 | Minus |
| 3R | 32079331 | 3R | 27705464..27705842 | 386..8 | 1865 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 23:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2392 | 933..977 | 117 | 73.3 | Plus |
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1736..1797 | 789..851 | 115 | 69.2 | Plus |
FMO06085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:32 Download gff for
FMO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 208..1293 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:31 Download gff for
FMO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RA | 152..1237 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:29 Download gff for
FMO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 208..1293 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:29 Download gff for
FMO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27704702..27705387 | 387..1069 | 97 | <- | Minus |
| 3R | 27705464..27705845 | 1..386 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:32 Download gff for
FMO06085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23530424..23531109 | 387..1069 | 97 | <- | Minus |
| arm_3R | 23531186..23531567 | 1..386 | 98 | | Minus |
