FMO06086.5prime Sequence
653 bp (-75 high quality bases) assembled on 2008-09-15
> FMO06086.5prime
TATAATAGGGAAGTTATCAGTCGACATGCCAACGGGGGCCAGTTGTAAAG
CCGGGGTCTGCGATTGCGCCGATGGCCAGAACTATCTGCGTGGCAAGTGT
CGCCCACTGAACGGACTCGGCGAGTCCTGCGAAACGGACTTGGACTGCTA
CTTTGGCTACGATCGTGCGTCTGTGAGTTGTCAGCAAAACGTGTGCGGCT
GTGCAAATGGCTATTATAACAGATATGGAAACATCTGCCGTCGCAAATCA
ATGGAAGAAAACGATGCCTGCGTCGTTAACGCGGACTGTGATGAACTGGG
CGCCGGTGTCGAGTGCGTTGGCCTAGTATGCACCTATGTGGACGAGATCA
CAACGACTCCGGGTGGCGAGACCGAGGAAACGGAGACCACCAATCCGGGC
TCGCCAGAGGATGATGATTCAACCACAGCCGAGGCGATCACCGAGACTGC
CGATCCGGAACAGGAGACCGCTTTCAGTAGCCGAAGGCAGCTAACCAAGG
CCTTTGTACACGCCCCCCCGCCCACTCACAGCGATGCCGCCGCCCAGGTG
TCCCTTCGCCCAGCTCACCAATGGCGACACCGAGCCGCTCATCTCGCCCC
GATCCCACGAGATTGCCGTTCAGACGAGCATCGAGAAGTACGAGCTGAGG
GAG
FMO06086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7381-RE | 2948 | CG7381-RE | 663..1289 | 26..653 | 3085 | 99.5 | Plus |
| CG7381-RD | 3098 | CG7381-RD | 813..1439 | 26..653 | 3085 | 99.5 | Plus |
| CG7381-RA | 2606 | CG7381-RA | 321..947 | 26..653 | 3085 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12969851..12970249 | 653..254 | 1935 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12970323..12970441 | 254..136 | 580 | 99.2 | Minus |
| 3R | 32079331 | 3R | 12970510..12970621 | 137..26 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:40 has no hits.
FMO06086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:33 Download gff for
FMO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7381-RA | 314..947 | 18..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:21 Download gff for
FMO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7381-RB | 625..1258 | 18..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:23 Download gff for
FMO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7381-RA | 314..947 | 18..653 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:23 Download gff for
FMO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12969851..12970248 | 255..653 | 99 | <- | Minus |
| 3R | 12970323..12970440 | 137..254 | 99 | <- | Minus |
| 3R | 12970511..12970628 | 18..136 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:33 Download gff for
FMO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8795573..8795970 | 255..653 | 99 | <- | Minus |
| arm_3R | 8796045..8796162 | 137..254 | 99 | <- | Minus |
| arm_3R | 8796233..8796350 | 18..136 | 96 | | Minus |
