FMO06087.5prime Sequence
522 bp (518 high quality bases) assembled on 2008-09-15
> FMO06087.5prime
CAGTCGACATGTCGATGTCGATAGACAGCAATAAGCTCTTGCTCCGGAAG
GGCGATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAGGCACTTAC
GCGACTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACATGGTGATGC
AAATTATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGGATGGCGAC
GTGCGAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTGTTCCAGGA
GTTCCAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACCAGGAAGAG
ATGCCACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCCACTTGACA
CCGCAGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCAGTTTCCGG
CTCCGTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCAACAGGTGG
GGTGCAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAGTCAGCGAC
TTTATCTCGTACTCCCGGATAA
FMO06087.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5274-RA | 1374 | CG5274-RA | 55..565 | 9..519 | 2525 | 99.6 | Plus |
| CG5274-RB | 1351 | CG5274-RB | 32..542 | 9..519 | 2525 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20427008..20427419 | 519..108 | 2045 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20427471..20427570 | 108..9 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:19 has no hits.
FMO06087.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:05 Download gff for
FMO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5274-RB | 32..544 | 9..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:22 Download gff for
FMO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5274-RA | 55..565 | 9..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:57 Download gff for
FMO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5274-RB | 32..544 | 9..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:57 Download gff for
FMO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20427005..20427418 | 109..522 | 99 | <- | Minus |
| 3L | 20427471..20427570 | 9..108 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:05 Download gff for
FMO06087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20420105..20420518 | 109..522 | 99 | <- | Minus |
| arm_3L | 20420571..20420670 | 9..108 | 99 | | Minus |
