FMO06088.5prime Sequence
455 bp (451 high quality bases) assembled on 2008-09-15
> FMO06088.5prime
AAAAGAGAAGTTATCAGTCGACATGAAGCCCACTGTGATGGCGGCCAATC
AGGCGCAAAGCAATCCCGCCACCGCCGCCGGTAATAATGTCTCACCCGGC
GGTCCCGGTGTCAATATACCCGTAAACCGGGAGTACGTGAGTGGCGGCTA
CGGATCGCCACAGCAGTCGGCACAGTTCCACACTCCCCAAAACGCTTACG
GATCGCCCAGGCAGCAGCAGCAGCACTTCCAGCAGCACCAGCAGGTTCCT
CCAAATCAGCAGCAGCAACATTTTCAGCCGACCTTTGGATTCGAACCGAA
CATGGACATGGACAACATGTTCCCGCGCTCGCACCTGGGCAGGATGCACG
ATCCCTTCGCCGGCTTCGGCGACTCACACTTTGGTTTCCCCCGCTTCTCA
ACGATGGGCCGCCGAGGTCGAATGGCCGGTGGGGCCAACACTCACATGGA
CCACG
FMO06088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stv-RA | 3279 | CG32130-RA | 687..1120 | 22..455 | 2170 | 100 | Plus |
| stv-RF | 3282 | CG32130-RF | 687..1123 | 22..455 | 2130 | 99.3 | Plus |
| stv-RE | 3357 | CG32130-RE | 687..1042 | 22..377 | 1780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13478227..13478482 | 22..277 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 13481033..13481135 | 275..377 | 515 | 100 | Plus |
| 3L | 28110227 | 3L | 13481201..13481291 | 365..455 | 395 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:22 has no hits.
FMO06088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:35 Download gff for
FMO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stv-RA | 681..1120 | 13..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:28 Download gff for
FMO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stv-RA | 669..1108 | 13..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:50 Download gff for
FMO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stv-RA | 681..1120 | 13..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:50 Download gff for
FMO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13478221..13478482 | 13..277 | 98 | -> | Plus |
| 3L | 13481036..13481135 | 278..377 | 100 | -> | Plus |
| 3L | 13481214..13481291 | 378..455 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:35 Download gff for
FMO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13471321..13471582 | 13..277 | 98 | -> | Plus |
| arm_3L | 13474136..13474235 | 278..377 | 100 | -> | Plus |
| arm_3L | 13474314..13474391 | 378..455 | 100 | | Plus |
