Clone FMO06089 Report

Search the DGRC for FMO06089

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:60
Well:89
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3987-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06089.5prime Sequence

651 bp (648 high quality bases) assembled on 2008-09-15

> FMO06089.5prime
CAGTCGACATGGCACATTCTATGCTGAAACTGGGGATGATGTGTGGAATA
CTCCACCTGCTGACCTTTGGAGTCATTGCCGAGGATCAGCTGAAAAACAA
CACAATAGTGGTACATACTCCTCTCCAGAACTACGATCAACCCAATCTCC
AGGACTACGAGGAATGCCAGGTGAACAGGGACAATTGCATCAATGTTTGC
GCTGGCAAACAGTCGTGCGAGGACGAGTGTCCTGTGTGCCCGGACCTGTA
CGTCAAGCCCCTGATGGTTCAGGGCATTAACGATACGAATATAGTGGCAC
CACCCCAGGTACCTATTAATACGACCAACATTATTCGGCTGACCAACGAT
ATCAACAATATAATCGAACATCAAATCCAAAATCGCAATGAGGTCAATGT
CCAGGTGAATCAGAATGTCTCGAAGGTGGGAGGACGTTTTGGACTGGGCT
ACACTGACAAGGGATCGTGCTGTTATGTGGTGCGTTTGGATCGCGAGTGT
AAGAATGAAGATGGACGCGACTGCAGAGAAAGAAGCCGTCAGCGGATCTG
TGGCGAAAAAGTGTCAGGCCAGAGTGATGTTGGCCAAAATAGTGGGTGCA
GTGTGAAACCGAGGACTCCGACAGGTGTCACGAAACCATCGAATATGTGC
A

FMO06089.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3987-RA 1483 CG3987-RA 90..729 9..650 3130 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15140336..15140961 23..650 3025 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 19:35:33 has no hits.

FMO06089.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:59 Download gff for FMO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 81..729 1..650 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:30 Download gff for FMO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 54..702 1..650 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:49 Download gff for FMO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3987-RA 81..729 1..650 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:49 Download gff for FMO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15140336..15140961 23..650 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:59 Download gff for FMO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10966058..10966683 23..650 99   Plus