FMO06090.5prime Sequence
837 bp (836 high quality bases) assembled on 2008-09-15
> FMO06090.5prime
CAGTCGTCATGAAAACGAGCACACCTCATCCACGGTCGATTTGGATACTT
ACAGGTTGCTGGTTGCTCCCCCTGCTCGGCCTAGCCCTCTTCCCGTTTCC
ACCGGTCCACACGGCTGACGTCACCATGGCTGACGCCGCCCACCAGGAGT
TCGCCCGCCGGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCG
GGGCAGAAGCCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGAC
TTGTGCGGCGATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGC
TGGACCAGGGACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACAC
AGTTTTCACCAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCAT
CGCCAACAAGATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTG
ATCAGCTGTTATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTT
TCCAAAAATGTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCG
CACCAACCATCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCG
AATCGCGACTCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAG
CACCAGTTCGCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGG
GGAGCGACAGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTA
CGCCGATCTGCCGGCGCTAGATGCCATGGGCTCTGGAACTGCCCTACAAG
ACTCAGACCTCTCTATGCTGATCGTACTGCCCAACAC
FMO06090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn42Da-RL | 2155 | CG9453-RL | 524..1353 | 9..837 | 4080 | 99.6 | Plus |
| Spn42Da-RK | 1789 | CG9453-RK | 202..987 | 53..837 | 3860 | 99.6 | Plus |
| Spn42Da-RJ | 1490 | CG9453-RJ | 202..987 | 53..837 | 3860 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6877575..6878404 | 837..9 | 4005 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:04:01 has no hits.
FMO06090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:59 Download gff for
FMO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1353 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:24 Download gff for
FMO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn4-RC | 520..1349 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:21 Download gff for
FMO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn42Da-RL | 524..1353 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:21 Download gff for
FMO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6877575..6878404 | 9..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:59 Download gff for
FMO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2765080..2765909 | 9..837 | 99 | | Minus |
