FMO06091.5prime Sequence
961 bp (956 high quality bases) assembled on 2008-09-15
> FMO06091.5prime
CAGTCGTCATGGGATTTGTGTTATCCAAGCTGCGGAAAGAAAAGTCCACG
GAGGCGGTGTTGGAGGGGCTGCAGACGCAGATCCAAGCGTTGGAGAAGTA
CATGATCAACACCGAGGAGCGCAAGCGCCGGTTCGTGACGAACTTCGTGG
GCTTCACCATCGGAGCATATATCGTGGGCTTCGGGCTCTGGTGGTACTTC
TACTTCCCGCCGACCATGCAGGAGTGCTTCATGTACCTGGTACCGCTGCT
GCTATTCCCCATTGTCATCATCTTTCTGCGGCGGCTGTTTACGTGGTACT
TCCAGCGCAAGCTCAACAAAAATGGCGATAAGCTGACTCGTCTGAAGGAG
GACAAGCGCAAGATATTGGAGCAGGTCATGGACAAAGAGACCTATAAGGT
GGCGGTGAATCTCCTGGAGCGTTTTGGCGACAAGAAGCAGCTCCGCATCA
GCGGTCTGCCGACCGGCTCAACGCCCAACCGCCCGCAAGTTGAGCGGTCT
CCACTGACCGTCGCTGCCGTCGCACGAACTTCATCAGCCGGAGGACAGCA
GCAGCAGCAGCGCTCGCTGGCTCCATACACCAGTGTTTACCGCAACAATA
ACAACAACCAGAACACATCGCTGAACAGCAGCGTCATCAGCACACATTCA
CTGGGACAGATGACGTCAGCTTCGCCGCAGTTGCGCGCCGTTCAAGAATT
GCGACGGCGATCGCCTTTTCCCATCGTGGACGATCGATCACGAAGTGCCA
TCGATCGCATTGTGGACTTCATCGTGGGTGACAGTCCAAAGGATCGATTC
GGCATGATCTGCAAGGCGTGCCACGCCCACAACGGAATGCTGCCGAAGGA
GGAGTACGAGTACACTACCTTTCCGGTGTGCCTTCTGCATGTACTTAACC
CGCAAGGAAGAAGCGACCGTGCTTCCCGGCTATCCTTGAGGACCCTCGGA
TACGGAACAGC
FMO06091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8735-RB | 1944 | CG8735-RB | 65..1015 | 8..953 | 4570 | 99.2 | Plus |
| CG8735-RA | 1448 | CG8735-RA | 125..1075 | 8..953 | 4570 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8598571..8599009 | 835..397 | 2195 | 100 | Minus |
| 2R | 25286936 | 2R | 8599472..8599702 | 265..35 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 8599267..8599403 | 402..266 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 8598205..8598290 | 918..834 | 285 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:05:31 has no hits.
FMO06091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:01 Download gff for
FMO06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8735-RA | 118..1082 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:25 Download gff for
FMO06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8735-RA | 87..1051 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:14 Download gff for
FMO06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8735-RA | 118..1082 | 1..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:14 Download gff for
FMO06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8598155..8598289 | 835..961 | 91 | <- | Minus |
| 2R | 8598572..8599007 | 399..834 | 100 | <- | Minus |
| 2R | 8599271..8599403 | 266..398 | 100 | <- | Minus |
| 2R | 8599472..8599701 | 36..265 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:01 Download gff for
FMO06091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4485660..4485794 | 835..961 | 91 | <- | Minus |
| arm_2R | 4486077..4486512 | 399..834 | 100 | <- | Minus |
| arm_2R | 4486776..4486908 | 266..398 | 100 | <- | Minus |
| arm_2R | 4486977..4487206 | 36..265 | 100 | <- | Minus |
