FMO06102.5prime Sequence
454 bp (454 high quality bases) assembled on 2008-09-15
> FMO06102.5prime
GCTGATCCCATGATAGAGGTCTTCCGATGGAAGCAGATGGACTTTTACAA
TCGCGGAGATGGCCATCTAAGCTCGGGCGGAAGGAAAGACAGGCCCAGCT
TTTCAGCTCCGGTTGTCTTTCCTGGAAAGTATTCTCGTCGAAAGCGTAAG
ATTATGACCTCCCGCGATACACCGGTAGTGGTCAGCTCCCGCGCCGACAG
CGACGACCCCAACGCCTCCTACATTCCGTACAATAACGTGCCCATGGGAG
CCACTCACTTCCGCGGCCGCCTCTTTGTCACGATGCCTCGTCGACGGGTG
GGCATCCCATCCACCTTGAATTACATCGATCTGGCCGAGGACGGATCGAA
TCGCAGCCCCAAGCTGCGGGCCTATCCCAACTTTGCGCTTAATCAGTTCA
ACGCGAGTGCGGAGAATCTGGTGTCCGTCTACAGAACCTCCGTGGATGCA
TGCC
FMO06102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-f2-RA | 1462 | CG8063-RA | 109..562 | 1..454 | 2270 | 100 | Plus |
| yellow-f-RC | 1391 | CG18550-RC | 234..453 | 229..448 | 410 | 79.1 | Plus |
| yellow-f-RB | 1406 | CG18550-RB | 249..468 | 229..448 | 410 | 79.1 | Plus |
| yellow-f-RC | 1391 | CG18550-RC | 126..185 | 4..63 | 210 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12994470..12994819 | 454..105 | 1750 | 100 | Minus |
| 3R | 32079331 | 3R | 12994934..12995039 | 106..1 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 12992514..12992733 | 448..229 | 410 | 79.1 | Minus |
| 3R | 32079331 | 3R | 12993017..12993076 | 63..4 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:50:44 has no hits.
FMO06102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:22 Download gff for
FMO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f2-RA | 109..562 | 1..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:45 Download gff for
FMO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f2-RA | 109..562 | 1..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:46 Download gff for
FMO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-f2-RA | 109..562 | 1..454 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:46 Download gff for
FMO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12994470..12994817 | 107..454 | 100 | <- | Minus |
| 3R | 12994934..12995039 | 1..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:22 Download gff for
FMO06102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8820192..8820539 | 107..454 | 100 | <- | Minus |
| arm_3R | 8820656..8820761 | 1..106 | 100 | | Minus |
