FMO06103.5prime Sequence
979 bp (-89 high quality bases) assembled on 2008-09-15
> FMO06103.5prime
CAGTCGACATGAATTGGACGCGCGTGCTGTTAATCGGGTTGACCGCCTTG
GCGCTGACATTTGTGGATGTTGCATCACTCTCACTCGATCCAGTTGCTTC
TGCTGAACTGGAGCAGTTTATACGCAAAGGAGATGTGGTCATATCAACGC
GACACATTAGACCTCGTCGAAAGTTGCACATATCCATAGAAGCACTCTTC
ATGATCGACTTCCCGATGCTGAAGCACAAGATGTCCTTCTTCCTGGACCG
CAAACAGCAGCGGGTAACGTTGGACATTAGTGCGAACGGAGCCACCGAGT
CGCGCAACTTCGAGATACCCAACATCAATGAGACAAGCACCATCCGATCC
CTGGCACTGCAGTTCTCCAAGAATCGCATAACGCTCCATGTGGACTGCAA
GGCGAGCACGCATCACGACATCAACATGAACCTGGCCAAGCTGTACACCC
AGATGGACGATCCGGTGATCAAGCTGTTCCGTGAGCACAAGTATCCCCTT
CACTTCGACGGGGACATGGAGCACTCCCTGCAGCGGGCCTATTGCCATAA
GGGCAACCATCGTCGTGGCAATCGTCGCATGCTGCGCAACAAGATCACCG
AGCGTGAGAAGAACAGAAGCGCGATGTGCGCGGCTGGTATGAGCCAACGA
TCGCCCGGGAAGGAGTCGTGGATCACAGACACCATGAGGTGCCAACGGAC
GTGGAGCGCGGTGATATTCCCGTTTCTGAATGGCGATTGCAAGACGCCCT
CGCACGATCGCTCATCGATTTACTGGCTCTGGAGAAGCTGCTCCCTAAAA
CTCCCCACCAGCGCCAGAGATTGCCTACCTGTCTTGCTCCTGGAGAACTG
TGCCGGCTGGAAGAATCCCTCACACGACAACCACTGCGCATCGAGCCGAC
TGCTGTTCGCCAATCCTGTTATCCTGGAGTGGATGCTGGGAATCGGCGGC
CGGTCCCGAATGGCCATGTCCCCTTGGCT
FMO06103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp-RF | 3892 | CG11326-RF | 576..1563 | 9..979 | 4230 | 96.5 | Plus |
| Tsp-RE | 2112 | CG11326-RE | 427..1414 | 9..979 | 4230 | 96.5 | Plus |
| Tsp-RC | 2135 | CG11326-RC | 450..1437 | 9..979 | 4230 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6700181..6700501 | 476..156 | 1590 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6699987..6700117 | 606..476 | 610 | 97.7 | Minus |
| 2L | 23513712 | 2L | 6699769..6699893 | 740..615 | 565 | 98.4 | Minus |
| 2L | 23513712 | 2L | 6701750..6701834 | 93..9 | 425 | 100 | Minus |
| 2L | 23513712 | 2L | 6700553..6700622 | 160..91 | 350 | 100 | Minus |
| 2L | 23513712 | 2L | 6697327..6697459 | 869..742 | 315 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:41 has no hits.
FMO06103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:34 Download gff for
FMO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 446..1437 | 1..979 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:47 Download gff for
FMO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 440..1431 | 1..979 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:16 Download gff for
FMO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp-RC | 446..1437 | 1..979 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:16 Download gff for
FMO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6699765..6699902 | 607..743 | 97 | <- | Minus |
| 2L | 6699987..6700116 | 477..606 | 97 | <- | Minus |
| 2L | 6700181..6700496 | 161..476 | 99 | <- | Minus |
| 2L | 6700553..6700619 | 94..160 | 100 | <- | Minus |
| 2L | 6701750..6701838 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:34 Download gff for
FMO06103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6699765..6699902 | 607..743 | 97 | <- | Minus |
| arm_2L | 6699987..6700116 | 477..606 | 97 | <- | Minus |
| arm_2L | 6700181..6700496 | 161..476 | 99 | <- | Minus |
| arm_2L | 6700553..6700619 | 94..160 | 100 | <- | Minus |
| arm_2L | 6701750..6701838 | 1..93 | 95 | | Minus |
