FMO06105.5prime Sequence
576 bp (-60 high quality bases) assembled on 2008-09-15
> FMO06105.5prime
GGCAATGTGGCGCTGTCCAAGTTCTGGAGCAGTGACTTTGAGGAGTCCCG
GGTGATTCCGCCGGTGCGCTGGCTCTTCTCCACACTGGCGCCCTTGGCCC
TGATGACTGTGGCTCTGCGCCGGAGGAGCGTCAACCGATCTGGAGCTGCG
CTGGGCATTCTGGTGGCCTTCATTCTCTCCATCGCCAGCCATCCGTTCTT
CGCCAGCTTGGTGGTGTTCTTCTTCAGCTCATCGCGGGCCACCAAGTTCC
GCGCGCACATGAAACGCCGTTTCGAGAGCGATTTTCGCGAGGGCGAAGGC
CAACGAAACTGGATACAGGTACTCTGCAACGGAGGCATGGCCGCCCAGCT
TGCATTGCTTTATCTGCTGGACTGCGGTAGTGGCGAGCGGGCGGTGGACT
TCGCACGAGAATACCGATCCAGCTGGCTGGGTGTGGCCGTTATGAGTGCG
TTTGCCTGTTGCAATGGCGACACCTGGTCCAGTGAACTAGGATCCGTGCT
GTCGCAACGCGATCCAGTTTCTATCATCACCTGGCTCAAAGCGCCGCGCG
GTACAATGGTGGGGTTTCGTTGCTCG
FMO06105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10171-RA | 1611 | CG10171-RA | 126..702 | 1..576 | 2815 | 99.3 | Plus |
| CG10171-RB | 1845 | CG10171-RB | 200..788 | 1..576 | 2685 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13387065..13387599 | 576..43 | 2580 | 99.3 | Minus |
| 3L | 28110227 | 3L | 13387666..13387708 | 43..1 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:51 has no hits.
FMO06105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:40 Download gff for
FMO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RA | 126..702 | 1..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:50 Download gff for
FMO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RA | 162..738 | 1..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:41 Download gff for
FMO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10171-RA | 126..702 | 1..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:41 Download gff for
FMO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13387065..13387598 | 44..576 | 99 | <- | Minus |
| 3L | 13387666..13387708 | 1..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:40 Download gff for
FMO06105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13380165..13380698 | 44..576 | 99 | <- | Minus |
| arm_3L | 13380766..13380808 | 1..43 | 100 | | Minus |
