FMO06108.5prime Sequence
873 bp (873 high quality bases) assembled on 2008-09-15
> FMO06108.5prime
CAGTCGACATGCGAGTAGTAACGGTACAACGGCTTTGGCCACCGCTCTTG
GAACGCCCGCCCAGGGACAACAACAACAGCGACGCCGCAAGGTGTCCGAA
TGCAAGTCGGAGAGCTTCGCCACCTCACCATCGCACGGTCAACTGGGCGT
GTCCTCCCCCCACCAAAGGATGCAAATGCAGCGCTGCCACAGTTCGCGCG
CTTTTCCACGCAACGCATCGCGCAGTTCGCACGGTTCGCTGCAGCAAATG
GTGTCGCCCACGCGCAGTAGTCCGCCCAGCCGCTCGCACACCGCATCCGC
ACTGGAAAGGCAGGCGGCCGCCCAGGCAGCCGCGATTAATCAAAAGCAAC
AACAGTCGGCCGCTGCAGCTGCTGCTGTTGAATCTTCAAATGATTATACG
AAGTTTCATTTGCGTTTGGTCGACAAGCTGCGCAAGTCCTTTCGCAAGGA
TAGCGGTAAGCGGTCATGAGAGCAGCGCAATCACAGCAACAACAACCAAA
TCTACGACAACAACAATGCCAGCAGCAGCAGCACGGCGCTCCTTTCCATT
TCCCACAACAATAACAACGACAACAACGGAGCCGGGTGGAAAGTTAGTGA
CGGTGCCGATGCCATTTCCAGAGGAAGATCGCCTGGAAGAGATGTGGAGG
AGTGCAGTTCTGCAACGTTCGAGGCACTGGAAGCGTGTTCGAGAGCAGCC
GAAGCGACAACACACAGAGAACGAGAGAGAGGCATGGTCAGTCGTTTGGG
GATACGCTTTCCGGCGATACTGTAGATTCCTGGCCCACTCCCCCCATGGA
AGCGCTGCGGCGCCAGAAGACGAGACAGAGGCGGAGGCTAGCACCTTGGA
GCAGCGCAAGCTTTCTAGACCAT
FMO06108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42240-RC | 2187 | CG42240-RC | 298..1143 | 9..855 | 4195 | 99.8 | Plus |
| CG42240-RA | 1909 | CG42240-RA | 298..1143 | 9..855 | 4195 | 99.8 | Plus |
| CG42240-RB | 1909 | CG42240-RB | 298..1143 | 9..855 | 4195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6331139..6331984 | 9..855 | 4170 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 19:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2411 | 477..579 | 188 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2399..2511 | 469..577 | 159 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1567 | 484..533 | 151 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2463..2627 | 484..641 | 149 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2469 | 471..577 | 148 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6816 | 469..533 | 147 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2427 | 477..577 | 145 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6842 | 469..577 | 139 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2644 | 485..533 | 137 | 75.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1146 | 458..533 | 130 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6883 | 469..579 | 125 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6774 | 484..533 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2387..2480 | 483..579 | 117 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1587 | 484..529 | 113 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6820..6882 | 469..533 | 113 | 68.2 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1257..1293 | 491..527 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6917 | 471..577 | 111 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6855..6918 | 471..533 | 110 | 65.6 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2637..2685 | 478..526 | 110 | 69.4 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2629..2719 | 488..576 | 108 | 59.3 | Plus |
FMO06108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:47 Download gff for
FMO06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42240-RB | 289..1143 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:53 Download gff for
FMO06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42240-RA | 273..1127 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:30 Download gff for
FMO06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42240-RB | 289..1143 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:30 Download gff for
FMO06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6331130..6331984 | 1..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:47 Download gff for
FMO06108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6225163..6226017 | 1..855 | 99 | | Plus |
