FMO06109.5prime Sequence
1055 bp (946 high quality bases) assembled on 2008-09-15
> FMO06109.5prime
CAGTCGTCATGTATCCCTTCGGAACTCCCACGGTGGTGCCTGCCGCAAAC
TTCGATGCCGTCAAGGATGCTCACGACTTGCGCAAGGCCATGAAGGGCTT
TGGAACAGATGAGGACGCTCTGATTAACATCATCTGTCGGCGATCCAACG
AGCAGCGCCAGGAGATCCAGCGCCAGTTCAAGACGCACTTCGGCAAGGAC
CTCATCGAGGACATCAAGTCGGAGACGAGCGGCAACTTTGAGAAACTCCT
CGTCGGCCTGCTGCGTCCCATCGTGGACTACTACTGCGCCGAGCTAAACG
ATGCCATGGCTGGCCTGGGCACCGACGAGGAGGTCCTCATCGAGATCCTC
TGCACGCTGTCCAACATGGAGATCAATACGATCAAAAACCAGTACTTACG
ATTGTACGGCGCCCATTTGGAGTCTGAACTAAAGTCGGAGACGTCGGGCA
ACTTTAAGCGGCTGCTCACCTCCTTGTGCACGGCGGCGCGGGATGAGAGT
GGTCGCGTGGATCCCGTGGCGGCCAAGAACGATGCTAGGGAGCTACTGAA
AGCCGGCGAACTGCGCGTCGGCACCGATGAGAGCATGTTCAACATGATCC
TCTGCCAGAGGAACTATCAGCAATTGAAACTGATATTCCAAGAGTACGAG
GGCATGACTGGCCACTCGCTGGAGAAGGCGATCAAGAAGGAGTTCTCCGG
CGATGTGATGGAGGGCCTGATTGCCATCTACAGGTGCGTCACCAACAAGG
CCGAATACTTCGCTTCGCGCCTGCACAAGGCGATGGCCGGAAATTGGCAC
CCATGACACCCAGTTGATCGTGTGATCATCACGCGCAGCGAGATTGATAT
GACGGACATTAGGGTAGCGTTCGGAACGTCTGTACCGGCAAGTCCCTCAA
GAGCTGGATAAGGGCGATACTTCGGGGCCATAACAAGCACGCCTTTTAAT
GCCCTGGTGGGATGACAGCGCCTCCTCCTGCAAGCTTTTCTAGACCATTT
CGTTTGGCCGCGGGCCCAAGGTAGTGGTCATAATCTTAATCAATAATCAT
AATCA
FMO06109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB11-RF | 1375 | CG9968-RF | 80..1044 | 9..977 | 4520 | 98.4 | Plus |
| AnxB11-RC | 1429 | CG9968-RC | 134..1098 | 9..977 | 4520 | 98.4 | Plus |
| AnxB11-RA | 1233 | CG9968-RA | 134..1098 | 9..977 | 4520 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16418668..16419049 | 402..21 | 1910 | 100 | Minus |
| X | 23542271 | X | 16418356..16418589 | 636..403 | 1140 | 99.1 | Minus |
| X | 23542271 | X | 16418081..16418291 | 842..632 | 945 | 98.6 | Minus |
| X | 23542271 | X | 16417960..16418026 | 909..841 | 230 | 95.7 | Minus |
| 3R | 32079331 | 3R | 21068339..21068413 | 291..365 | 225 | 86.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 6376..6439 | 197..136 | 126 | 68.8 | Minus |
FMO06109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:24 Download gff for
FMO06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB11-RA | 129..1098 | 4..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:54 Download gff for
FMO06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Anxb11-RA | 103..1072 | 4..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:48 Download gff for
FMO06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB11-RA | 129..1098 | 4..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:48 Download gff for
FMO06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16418668..16419058 | 14..402 | 98 | | Minus |
| X | 16417956..16418024 | 843..912 | 94 | <- | Minus |
| X | 16418081..16418290 | 633..842 | 98 | <- | Minus |
| X | 16418360..16418589 | 403..632 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:24 Download gff for
FMO06109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16311989..16312057 | 843..912 | 94 | <- | Minus |
| arm_X | 16312114..16312323 | 633..842 | 98 | <- | Minus |
| arm_X | 16312393..16312622 | 403..632 | 99 | <- | Minus |
| arm_X | 16312701..16313091 | 14..402 | 98 | | Minus |
