FMO06110.5prime Sequence
1133 bp (992 high quality bases) assembled on 2008-09-15
> FMO06110.5prime
CAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGCTGAACAGC
CTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCACAACAACTA
CTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGAGCCTCCAA
TCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTGACACGGTT
TTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAACGCGATGGC
CAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTGCCACATGC
ACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGGACCATTTC
CGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCTGTTGCCGA
CGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCCGAATCTTT
TCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACGTGTCGCCG
CCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGATTGTGTGCG
CGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAATCCCAAGA
TGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACTTCGACCTC
GCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGTAAGATTTC
CGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCTCGTCAAGG
ACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACGCCGTACTC
GCCGCCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAGATGTTCG
CCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAACAGCAAG
AAGAAGATGCCACAGGGCAGAATTGTGGGCTCCTTCCTCATCGGTGACAG
CTCTTGTACGACTTCGTGGACACATCCCTTCATCGAAGATGTACGCCATC
GACTATGTGACAAACCAGCATTGTGAAACAGCAGCTCTCGAATGACGGCA
ATCAACAGCCTGCATCGAGGTGAATCTGACTGGACAGTGGTGCTCAGAAC
TCGAATTATCCCCGCTTCTATCAGCTCGGGCGA
FMO06110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7920-RC | 1791 | CG7920-RC | 170..1282 | 8..1120 | 5110 | 97.8 | Plus |
| CG7920-RA | 1910 | CG7920-RA | 289..1401 | 8..1120 | 5110 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30011669..30012062 | 582..189 | 1955 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30011218..30011608 | 972..582 | 1755 | 97.7 | Minus |
| 3R | 32079331 | 3R | 30014811..30014996 | 193..8 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 30010985..30011117 | 1120..987 | 315 | 89 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:40 has no hits.
FMO06110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:34 Download gff for
FMO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1407 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:44 Download gff for
FMO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 361..1487 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:37 Download gff for
FMO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7920-RA | 281..1407 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:37 Download gff for
FMO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30011203..30011607 | 583..985 | 97 | <- | Minus |
| 3R | 30011669..30012061 | 190..582 | 99 | <- | Minus |
| 3R | 30014815..30015004 | 1..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:34 Download gff for
FMO06110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25836925..25837329 | 583..985 | 97 | <- | Minus |
| arm_3R | 25837391..25837783 | 190..582 | 99 | <- | Minus |
| arm_3R | 25840537..25840726 | 1..189 | 98 | | Minus |
