FMO06113.5prime Sequence
886 bp (886 high quality bases) assembled on 2008-09-15
> FMO06113.5prime
CAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCGGCCGGGCA
AACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTGCAGCCGGG
AGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAAGCTGCGCT
ACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGTCCAGGAGC
TGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGATCTGAACTC
GGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTTTGAATCTC
CTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCAAACCTCCT
CCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTGACTTCTGC
CACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCATGCCAAATC
TGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGCTTCCCGAC
TTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCCCCACAAGC
ATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACCCGACAGAT
TAATAAGTCCGCCCAAGGCAAAAGCAGTACAAAACTGAGGACACCAAAGC
CAAGGAACATGTGGGCTCATCTGAAGGAGCTACGTCCCAAAGCTGGCAAG
GGCAAAGCTGAAATACCATTTACTACCCGCTTGTGTGAAGGCAAGTGTGA
GGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCTTCAGCAGTCCGCCC
AAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACAGGCCA
CGACGCACTGCAGGCATGGCTTCACCACCAGCTCGT
FMO06113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8229-RE | 1951 | CG8229-RE | 308..1183 | 8..886 | 4260 | 99.3 | Plus |
| CG8229-RD | 1459 | CG8229-RD | 308..1123 | 8..826 | 3975 | 99.4 | Plus |
| CG33199-RB | 1523 | CG33199-RB | 261..323 | 824..886 | 300 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8949845..8950660 | 826..8 | 3850 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8948881..8948943 | 886..824 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:50:50 has no hits.
FMO06113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:26 Download gff for
FMO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8229-RE | 305..1183 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:00 Download gff for
FMO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8229-RE | 323..1201 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:51 Download gff for
FMO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8229-RE | 305..1183 | 1..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:51 Download gff for
FMO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8948881..8948941 | 826..886 | 98 | <- | Minus |
| 2R | 8949846..8950663 | 1..825 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:26 Download gff for
FMO06113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4836386..4836446 | 826..886 | 98 | <- | Minus |
| arm_2R | 4837351..4838168 | 1..825 | 98 | | Minus |
