FMO06117.5prime Sequence
796 bp (795 high quality bases) assembled on 2008-09-15
> FMO06117.5prime
CAGTCGACATGGACACCGAGGAAGTGAAGCGCGGCCGCGGACGAGGGCGT
GGCACCAGGGCTCGCGGGCGCGGACGTGGCCGAGGACGCGGTCGTGGCAA
GAAAATCGACGACAGCAGCATCGCCGACGCCGCAGCCCTGGCGGCCAGCA
GCTGTGCAGCCCTGGAGGACAGTCCGGGAAGACTGGACGCCTCCGAAGAT
TCGGTCATGCAGGAGCTCGACAAGGACGGCGAACTGGAAACGCCCGGCGC
TCTGGAGGAGCCCCTGCCGCACGGTGCGCTAGGAGCGGTCGCCGCCAGCG
GGAACATGACTCCAGCGACGCAACAGCCACAGGTCCTGCAGCAAGTGCCA
CCGCCCGTGATGAGCCAAACAATCGACATGGAGGCGGACATATCGCAACT
GGAGGCGCCCACTTTCACCACGCTTTCGCGCGGACCGCCGGAGCCGATGC
TGCGCCTTAAGTGGAACCACAAGGTGAGCCTGATCGGCGAGAAGGTGCTG
AACCCGATGATCCACTGCTGCGATCAGTGCGACAAGCCGATCCTCGTCTA
CGGCCGCATGATACCCTGCAAGCATGTATTTTGCCTCAAGTGCGCCCGCG
CCCGAGCCCATCAAGAGTTGTCCCCGCTGCACGGACAAGGTGTTGCGCGT
GGAGCAAGTGGCCTGTGCACCGTGTTCATGTGCACGCACGGCGGCAGTCG
CTACGGCAGCTCCGGCTGCCGTAGAACATACCTTTCGCAACGCGACCTGC
AGGCGCACATCAATCACAGAAATGTGGCGCCGCCACCCGCCACCGT
FMO06117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hakai-RE | 1663 | CG10263-RE | 105..891 | 9..796 | 3825 | 99.2 | Plus |
| Hakai-RA | 1733 | CG10263-RA | 105..891 | 9..796 | 3825 | 99.2 | Plus |
| Hakai-RF | 1690 | CG10263-RF | 496..918 | 373..796 | 2005 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19581466..19581876 | 783..373 | 1930 | 99 | Minus |
| 2L | 23513712 | 2L | 19582007..19582370 | 372..9 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:23 has no hits.
FMO06117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:40 Download gff for
FMO06117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hakai-RA | 95..891 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:01 Download gff for
FMO06117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10263-RD | 118..914 | 1..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:41 Download gff for
FMO06117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hakai-RA | 95..891 | 1..796 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:41 Download gff for
FMO06117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19581454..19581876 | 373..796 | 98 | <- | Minus |
| 2L | 19582007..19582378 | 1..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:40 Download gff for
FMO06117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19581454..19581876 | 373..796 | 98 | <- | Minus |
| arm_2L | 19582007..19582378 | 1..372 | 98 | | Minus |
