FMO06118.5prime Sequence
1147 bp (1034 high quality bases) assembled on 2008-09-15
> FMO06118.5prime
CAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCTGCGGTCTC
CTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGCATTTTGGG
CCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGAGTACGCGG
ACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACGCCACCAAG
AAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAGATCGTCCA
GGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGAGAAAACTG
AGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCTCCGAAGGT
GGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAGATGATGAC
GCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTGGCAGGACA
AGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACAGCTGCGTG
GTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAGGGCAGCGC
CTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGCCAGGAACT
TTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATTACATTCAC
TTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGGGAGGAGGC
TGGCGAGCAGACAACTCCTACTTTAAGCCCCACGCTCTCCGCCTTTCAGT
TTAACGAAAAACAGCCAACGGAAACAGTGCTTAATATACCCCTCAATTTG
CCAAAGCTGCCCAATGGCTCCAAAGAGGAATCGCCAAGCTACGATGACGA
TGCGGTTCCCTTGCGCGTGCACGATATTCGCTAATCTCATCATACTGGCG
GACACCTCGGGCATGTTTTTCGTCTGTCACTACTACCTGTACCAGCCGAT
GCAGTCGGAGCAAAGGATGTGCACTTTGCCTACTCGGTGACTTTGCTTCA
CCACGGCTATGTGGTGCACTGCGTCATGCCCGGGGTGCCCGGGCAAAAGC
CCGTCTGCTGAGCACATTGCGCTCACGGCCAGCATCCTTGCTTGGTGTCG
TCCGCCTTTTTTGTCACCTTTTGACGTTGGACTGACGAGGAAACGAA
FMO06118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pigeon-RB | 3334 | CG10739-RB | 87..1223 | 9..1134 | 5300 | 98.4 | Plus |
| pigeon-RA | 3187 | CG10739-RA | 87..1223 | 9..1134 | 5300 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19186249..19186655 | 71..477 | 2035 | 100 | Plus |
| 2L | 23513712 | 2L | 19186719..19187020 | 478..779 | 1510 | 100 | Plus |
| 2L | 23513712 | 2L | 19187078..19187423 | 779..1115 | 1235 | 94.5 | Plus |
| 2L | 23513712 | 2L | 19186129..19186192 | 9..72 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:30 has no hits.
FMO06118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:29 Download gff for
FMO06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pigeon-RA | 87..1223 | 9..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:03 Download gff for
FMO06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pigeon-RA | 89..1225 | 9..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:51 Download gff for
FMO06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pigeon-RA | 87..1223 | 9..1134 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:51 Download gff for
FMO06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19186129..19186192 | 9..72 | 100 | -> | Plus |
| 2L | 19186251..19186655 | 73..477 | 100 | -> | Plus |
| 2L | 19186719..19187020 | 478..779 | 100 | -> | Plus |
| 2L | 19187079..19187444 | 780..1134 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:29 Download gff for
FMO06118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19186129..19186192 | 9..72 | 100 | -> | Plus |
| arm_2L | 19186251..19186655 | 73..477 | 100 | -> | Plus |
| arm_2L | 19186719..19187020 | 478..779 | 100 | -> | Plus |
| arm_2L | 19187079..19187444 | 780..1134 | 95 | | Plus |
