FMO06120.5prime Sequence
1150 bp (1015 high quality bases) assembled on 2008-09-15
> FMO06120.5prime
CAGTCGTCATGTCTGCTGAAGCCGAAGCAATCGTCACAACGGCAACTGCC
GATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTTGCTGCTGA
TACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAGCGGAAAGG
CAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGCTGTTCAGC
CAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCAGCTGACGA
GCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGAACTGGCCG
ATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAATTGCAATG
GCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCTGCCGATGA
TGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGAAGATGGAG
CGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAAATGGTGCA
AGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGGTCCGATGA
GGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGAAAAGCCCT
CTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCAATGGCGGT
GGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCGAATGGTGA
GGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGAGGAAGAAC
CCGAAGAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTTGGCCTGGGAAATT
CTAGAGGCGGCTGCTCAGATCTTCTCGCCCAAGGGCTCAGTGGACTCCCC
TACTTGGCTGAGGTCAGACTGAGCTGGCTAACATTGAGTTGAGAATGGAA
TACTAGAGGCGGCACGCGAAGATTATGAGAAAGCACTGAAAATCCCGGGA
GAGCTGCCCACAAGAAACCGACGTGCTTGGCCGAGTTGCTTTACAAGATC
GGGCTGACCTATTTGATGCACAACTCACAAGGAGGACGGACGCACCTGGC
GTCATCAGCTGGTTGATGAGGAAGAATCGCTGAAGATTATGGCAAGGAAC
GAACCTAGCGGCGCGACAGAAACAATAGGGTTGGAAATGTGAGGAACTAA
FMO06120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8223-RB | 2253 | CG8223-RB | 470..1598 | 9..1127 | 5005 | 97.3 | Plus |
| CG8223-RA | 1999 | CG8223-RA | 216..1344 | 9..1127 | 5005 | 97.3 | Plus |
| CG34135-RC | 7398 | CG34135-RC | 3552..4156 | 927..326 | 2905 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8752514..8753118 | 326..927 | 2780 | 99.2 | Plus |
| 3R | 32079331 | 3R | 8752082..8752398 | 9..325 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 8753180..8753274 | 927..1020 | 365 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:47 has no hits.
FMO06120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:54 Download gff for
FMO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 211..1231 | 4..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:06 Download gff for
FMO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 203..1223 | 4..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:52 Download gff for
FMO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8223-RA | 211..1231 | 4..1020 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:52 Download gff for
FMO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8752077..8752398 | 4..325 | 99 | -> | Plus |
| 3R | 8752514..8753118 | 326..927 | 99 | -> | Plus |
| 3R | 8753181..8753274 | 928..1020 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:54 Download gff for
FMO06120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4577799..4578120 | 4..325 | 99 | -> | Plus |
| arm_3R | 4578236..4578840 | 326..927 | 99 | -> | Plus |
| arm_3R | 4578903..4578996 | 928..1020 | 94 | == | Plus |
