FMO06122.5prime Sequence
992 bp (967 high quality bases) assembled on 2008-09-15
> FMO06122.5prime
CAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCCCGTACCGC
CGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGACAGCGGCCA
GGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGGCATCGAGA
TCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGCAGCTGGAC
GAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGCGTTAAGAA
GACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCTCAGTGTGC
TCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTGCTTTTGAA
TTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGCAACTCCGG
AAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCATCGTGGCAG
TGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATCAGCGCAGC
GGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAAATCATCAA
GTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCACCATTCTGA
AACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGTCCCTTAAG
GATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAAGTTGGTGG
TTGGAGTGTTTGGAGCTATCGCCGGGAGCAGCCTCTGTGTTCGGTAATAC
GCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCATCGAAAT
ACAAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGACGAAGGTCCC
GCCGTCTTCTACAAGGGCAACGTGCCAAGATTAGGTCGTGTGTGCCTGGA
ATGTTGGCCATCACCTTTTATGATCTACGACTCCTTCATGGATCCTGTTC
AACAAGGTTTGGGTGGCAAGCATTTCTAAACCATTCGTTGGC
FMO06122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fabp-RC | 1660 | CG6783-RC | 430..1388 | 1..965 | 4555 | 98.7 | Plus |
| sea-RE | 1444 | CG6782-RE | 214..1172 | 1..965 | 4555 | 98.7 | Plus |
| sea-RD | 1660 | CG6782-RD | 430..1388 | 1..965 | 4555 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11560168..11560794 | 965..333 | 2730 | 97.9 | Minus |
| 3R | 32079331 | 3R | 11560852..11561185 | 334..1 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:26 has no hits.
FMO06122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:25 Download gff for
FMO06122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sea-RC | 116..1077 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:56 Download gff for
FMO06122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6782-RD | 425..1386 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:34 Download gff for
FMO06122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sea-RD | 430..1391 | 1..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:34 Download gff for
FMO06122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11560165..11560792 | 335..969 | 97 | <- | Minus |
| 3R | 11560852..11561185 | 1..334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:25 Download gff for
FMO06122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7385887..7386514 | 335..969 | 97 | <- | Minus |
| arm_3R | 7386574..7386907 | 1..334 | 99 | | Minus |
