FMO06124.5prime Sequence
1148 bp (940 high quality bases) assembled on 2008-09-15
> FMO06124.5prime
CAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGCATGTGGCC
CGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTGGAGACGGT
CACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTCGCTGTCCA
AGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGGGCAACATC
GGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTAGCTATCAA
AGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGACGGACATTA
CCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAACAGATCTTC
TCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCCCAGTGCGA
CAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGATGGCAAGG
ATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGTTGTGGCGA
CAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAGGGCAAGAA
GCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGCTGGACGTG
GCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATACGCGCGAA
CAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATGCCCCAACA
ACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGCCGGATAC
GGAAATATGGGAGTGTACGATACACGTCCGCCACGTCCTTACTCGATCGA
ATTGAACCGAAGCTATCAGTCGGAGCAGATCGATGGGAGCACCTACGAGC
AGCTTCCACCGCAGATGGGTAATCAGTATGCTGCCACCCTCTGCAACGGC
ATGGGGTGGCCCCCAGCAGATGCACATGCAGCATCAGCAGATTTATGACG
CCGGAATTGTATCATCCCATGCGCTTGTACGGTCAAACTGGACAGGGAGT
AATGTCGCGGAGCCCATCTTACGGACCGGAAACACCGTCGCGTAACAAAC
CGCGGTCCGTCGCTAGCCGCACCGGCTCCGCCATTGAATGGCCAGGGTTG
GTGGTCAGCCCCACCAGCCTCCATCCAACACCTCGACACAGGGACAAA
FMO06124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RE | 2833 | CG4636-RE | 261..1386 | 8..1138 | 5065 | 97.3 | Plus |
| SCAR-RA | 2292 | CG4636-RA | 261..1386 | 8..1138 | 5065 | 97.3 | Plus |
| SCAR-RC | 2914 | CG4636-RC | 261..1009 | 8..757 | 3725 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10977961..10978706 | 8..754 | 3685 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10980445..10980779 | 755..1092 | 1125 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:47 has no hits.
FMO06124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:12 Download gff for
FMO06124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RA | 253..1359 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:01:58 Download gff for
FMO06124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RA | 251..1357 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:42 Download gff for
FMO06124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RA | 253..1359 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:42 Download gff for
FMO06124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10977953..10978706 | 1..754 | 99 | -> | Plus |
| 2L | 10980445..10980797 | 755..1111 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:12 Download gff for
FMO06124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10977953..10978706 | 1..754 | 99 | -> | Plus |
| arm_2L | 10980445..10980797 | 755..1111 | 93 | | Plus |
