FMO06127.5prime Sequence
1162 bp (-70 high quality bases) assembled on 2008-09-15
> FMO06127.5prime
ATTAAACGAAGTTATCAGTCGACATGGATGCGCTACGCTTCCGTGGTTCA
CCATTCGCCCGCTTTACGGGCCAGTCGACCGGACCGGGCCATCCCCGTCC
GCCGCCACACCCACAACATCCGCAACGCCCACAGGCGGCGGGAACACACG
GCATCAGTGCCCCGGAGCCGCTGATCGTTGTGGAGGAGTCCAATCTGCCG
GAGGAGCAGGAGGACAGCTCTGAGCCGACGGTCTCGAATCGCGGCAGCCT
GGACATCGACTCGCCCGTGAATCCGTATCTACTCTCGCCATGGCGGGATC
CACGCGAGGCCAGAAAGCATTCGCTGCCCTCGCAGCAGGTGACCGACGGC
ATCACGGCCAGCCAGGTGCGCCGGCTCTCGGAGCGAGGCGGCGAGGGATC
GGGGCCCACACCGAAGGAGGCCGCCTTTTTGGCCACTTTGTCGCAGGCTC
CGGCGCCGACCGGACGTCGCCACTCGGTGGTGACCATCTCGAAGGTGCCC
ACCACACTATTTGGACGCTCGCGTCGCGAATCCGTGGCCGCGTATCCCAA
CAGCAATGGGAGCAGTCGGGTGCTGAAATTCCCGCCGGGAGAGCAACACA
GGTCCCCCATCGACAGACCCCATCGGCAGCATTCACAATCTGCAGCTGGA
CATCATGGACGACATCTACTTGCAGTCGCGCAAGGCCCGCTTGAAGCTTT
GGACATCCTCCAACGAGAAGGTGTGCGAGGTGCAGACCGTCGACGAGGCC
GGCTCCGGCCAGCCGGGCCGACGATTCACCACCGTCGCTACTCGGAATGC
CCCCAGCCAGGATTGGCCAGCTCCTTTCGCCGCGCCTCCGAGCTGCCGCC
GTCGCAGCAGCAGAGCAGCAGGGTCAGTCGCAGACTTCGACTCGGGCCTC
AACGCTCCCAGAAATCGGGCAGTGGAACTGGACTATTGGGAGTCTTCGGA
CATCGCCGCATATTTACTCGTTGACACTCGCCTGGTATGCACCGGCCGGA
ACCGGAAGCCGGGATGCAAGCTCAGTGCCTAGTTCTTCGGCACGGCCCCG
GCCAGAACCCGGTTCTCGCCTGAACTTTCAGCGGCCGCCTCTGGGGCTGA
CTCCACGCCACAGCCCACACCCACCAACCAAAACGGGATCACCTGGGAGG
TGGGCGCAGGGA
FMO06127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 513..1594 | 24..1088 | 4715 | 97 | Plus |
| CG6123-RA | 4949 | CG6123-RA | 513..1594 | 24..1088 | 4715 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18328949..18329482 | 560..27 | 2670 | 100 | Minus |
| X | 23542271 | X | 18328055..18328565 | 1055..559 | 1630 | 93.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:52 has no hits.
FMO06127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:41 Download gff for
FMO06127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..1468 | 24..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:16 Download gff for
FMO06127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..1468 | 24..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:21 Download gff for
FMO06127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 513..1571 | 24..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:21 Download gff for
FMO06127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18328042..18328564 | 560..1067 | 94 | <- | Minus |
| X | 18328950..18329488 | 19..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:41 Download gff for
FMO06127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18222075..18222597 | 560..1067 | 94 | <- | Minus |
| arm_X | 18222983..18223521 | 19..559 | 99 | | Minus |
