FMO06130.5prime Sequence
1142 bp (1047 high quality bases) assembled on 2008-09-15
> FMO06130.5prime
CAGTCGACATGGAATCGATTACCTTTGGAGTTTTGACTATTAGCGACACA
TGTTGGCAGGAGCCGGAGAAAGATACAAGTGGTCCTATATTGAGACAACT
TATCGGTGAAACCTTTGCTAATACCCAGGTGATTGGAAACATAGTTCCGG
ACGAAAAGGATATCATACAGCAAGAGCTACGTAAATGGATCGATCGGGAG
GAGCTGAGAGTGATTCTGACTACCGGAGGAACGGGATTTGCACCACGGGA
TGTGACCCCAGAGGCCACGAGGCAGCTACTAGAAAAGGAATGCCCACAAC
TCTCCATGTATATTACACTGGAGTCCATCAAACAAACCCAATATGCGGCT
CTTTCCCGCGGACTCTGTGGCATTGCAGGAAATACTCTCATCTTAAACCT
TCCTGGTAGCGAAAAGGCCGTAAAAGAGTGTTTCCAGACCATTAGTGCAC
TTTTGCCTCACGCTGTTCACCTTATAGGTGACGATGTGTCCCTGGTGCGG
AAAACACATGCTGAGGTCCAAGGATCCGCCCAAAAGAGCCACATTTGTCC
TCACAAAACCGGAACTGGTACAGATTCTGATCGGAATTCACCCTATCCAA
TGCTGCCCGTTCAAGAAGTGCTTTCAATTATCTTTAACACGGTACAAAAG
ACCGCCAATCTGAACAAAATTCTGTTGGAAATGAACGCGCCGGTTAACAT
TCCGCCCTTTAGGGCTTCCATCAAGGATGGCTATGCCATGAAGTCCACTG
GATTTTCTGGCACTAAGCGTGTTTTGGGATGCATAGCCGCCGGAGATTCA
CCTAATTCTTTGCCGCTGGCAGAGGATGAGTGCTACAAAATTAACACAGG
GGCACCATTACCCCTGGAGGCAGATTGCGTAGTGCAAGTGGAGGACACCA
AGTTGCTGCAGTTAGATAGAACGGCCAGGAAAGCCTTGTTGACATTTTGG
TGGAGCCACAGCTGGATAGATGTAGGCCTGTGGCTACGATCTAGCACATG
ATCGATTTTCCTGCCTCTAGATCCTTCTCCGTGTGTCAATCGCTGCTGCT
TCGTGGCATAGTGAACCATCGAGCTAGTGCCTATAAGGTTCCACTGGAAG
TGGACTGGTTCCCCGGCAATCAGCTATCAGGAAAGATCTTGA
FMO06130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cin-RA | 2110 | CG2945-RA | 121..1262 | 9..1125 | 4930 | 96.9 | Plus |
| cin-RB | 2054 | CG2945-RB | 121..1262 | 9..1125 | 4930 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 255881..256641 | 40..800 | 3805 | 100 | Plus |
| X | 23542271 | X | 256762..256922 | 801..960 | 755 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:29 has no hits.
FMO06130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:07 Download gff for
FMO06130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 561..1595 | 1..1030 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:22 Download gff for
FMO06130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RA | 142..1176 | 1..1030 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:12 Download gff for
FMO06130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 117..1151 | 1..1030 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:12 Download gff for
FMO06130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 255881..256641 | 40..800 | 100 | -> | Plus |
| X | 256762..256940 | 801..975 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:07 Download gff for
FMO06130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 149914..150674 | 40..800 | 100 | -> | Plus |
| arm_X | 150795..150973 | 801..975 | 97 | -> | Plus |
