FMO06131.5prime Sequence
1123 bp (946 high quality bases) assembled on 2008-09-15
> FMO06131.5prime
CAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACTACCAGCGC
ATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAGCACGAAAC
AGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGAGCGACAGC
GGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGGCCTTCTAC
CGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTCATCCCAGT
GCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAAGAAGGCTG
CGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCGAGGTGTCC
ACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCCATCCTGGC
CCAGACGTCCGTTTACCACGAGGTAAAGAACCTGCCCATGACGGATCTGC
GCCGTTGGGAGGAGAACTGCAACCGGGAGGTGAAGTGGGGTCCACACCAG
CGCATCGAATCGATTCATGCCCAGAACCGAATGCGTATTCTTACTGCTTT
GCTGTTCTGCTACAACCAGCAGGTCAGCCAAAACGCAGAAGTCTTCGCTA
CTGCACTTGTGCCGGGTCACATCGCAGTTGGTGAACCAAGGATTCACCAC
GAAGTCGGGTCATGGCCATCGAATGAGTTATGGATCTGATCCTGCAACCG
GAGTACCTTTTCCCAAGCCCTCTTCACCGCGCATTCCACTGTCCGCCCGC
CTTCCTGATCGAGCTGGTGCACGCCATCTATTTCGCCATGTTTAATGGCT
TCGGCACGATAGCCATTCAGACACTGGACGACATCCACAACCGGGCCATC
TACGAAATGTACTCGGAAATGATCCTGGTGACCAGCGCAGTGCGAAATTC
GCTGCACGCCATTCTTCCGACAGCCCAACGACGTCCCATGGCCTGGATGT
TGGCCTAACGCCGTCACAACAACGGTGACCACATCGGTGTCAAAGTCTAT
GATCACGACGCTTCCTTCCGTACGAAAAACTGGCCGAACGAACTACCTAT
CAGGTTACGGACCTTCAAAACGCTGCTCCGCGCACCTTGCCAGGTCACTG
TAGGAAACGGAACCGGTCCCAAG
FMO06131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-RA | 2734 | CG6406-RA | 203..1319 | 9..1116 | 4835 | 96.6 | Plus |
| CG6406-RB | 2740 | CG6406-RB | 209..1325 | 9..1116 | 4835 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17736332..17737005 | 683..9 | 3325 | 99.9 | Minus |
| 2R | 25286936 | 2R | 17735926..17736277 | 1029..683 | 1270 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:10 has no hits.
FMO06131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:55 Download gff for
FMO06131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 201..1251 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:09 Download gff for
FMO06131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RA | 190..1240 | 1..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:49 Download gff for
FMO06131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 201..1251 | 1..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:49 Download gff for
FMO06131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17735909..17736276 | 684..1046 | 94 | <- | Minus |
| 2R | 17736332..17737010 | 1..683 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:55 Download gff for
FMO06131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13623414..13623781 | 684..1046 | 94 | <- | Minus |
| arm_2R | 13623837..13624515 | 1..683 | 99 | | Minus |
