FMO06134.5prime Sequence
1080 bp (775 high quality bases) assembled on 2008-09-15
> FMO06134.5prime
CTTTTACAAAGTTATCAGTCGACATGAAGGACCTCTTCTGGCACCTGGTG
GGCATAGCCACCGGCCTAAAGATCCTGCTGATTCCAGCCTACCATTCCAC
GGATTTCGAAGTCCATCGCAACTGGCTGGCCATCACCCACAGTTTGCCGC
TGAATCAGTGGTATGTGGACGCCACCAGCGAGTGGACACTGGACTATCCG
CCGTTCTTCGCCTACTTCGAGTGGCTGCTCTCGCAGGTGGCCAAGTACGT
GGATCCACGAATGCTGGTGGTGGATAACCTGAATTACGAGTCCAAGGCCA
CCGTTTACTTTCAGCGGCTCTCGGTGATTGTTACGGATCTAGTGTATGTG
CTCGGCGTGCGCAGCTGCCTGGGCTCACTGGGATTGGGCAGGGATACGCA
GCAGTTCTTTGCCGCCTCCATGTTGCTGCTCCTCAACGTGGGATTGATCT
TCGTGGACCACATTCACTTTCAATACAATGGCTTGCTGTTCGGCATACTG
CTCCTGAGCATCGGTTCCCTCATCCGGCAGCGGTTCCTCTGGAGCGCCTT
TGCCTTCGCCGTGCTGCTCAACTTTAAGCACATCTTTCTGTACATGGCGC
CCGCTTTTGGGGGTCTACCTGCTGCGTTTTCTATTGCCTGGAGCAAGCGA
GTGTGGTGTCTGCGGTGGGTGCCGTTGTCAAGCTGCTGGTCGTTGGACTT
ACTCCGTTCGCCGTGCCTCTATTTACCCTTCTGGCACAATTGCCGCAAGT
CCTCTCCCGTCTGTTTTCCTTTCAGCGTGGCCTACGCCGCCTACTGGGCA
CCCAACTTTCTGGGCGCTGTACATGCCCCCACAATTGGCCGCCGGATTTT
GAAGGTCAGGATGGCGGTCCTCCACGACCCCAGGATTGGTCCAGAGTCAG
GCACTCGTGCTGCCGCCATCCACCGCTGTGACTTTTGCCCTGAACCGCTC
TCTCATGCTGCCCTTTTGTGGAACCTCTTCGAAGGCCAGAAACAAGACCA
CCTGAGTCTTCCGGCAGCGGAGGTTTGGAGGGCTGTTCCTCCTTCTCTTC
GCTGGCTGTGACAATAGGTCATCCTAATGT
FMO06134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| xit-RA | 1640 | CG4542-RA | 78..1128 | 24..1056 | 4145 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6821216..6822102 | 92..967 | 3205 | 95.9 | Plus |
| X | 23542271 | X | 6821093..6821160 | 24..91 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:01 has no hits.
FMO06134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:02 Download gff for
FMO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4542-RA | 78..1135 | 24..1063 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:08 Download gff for
FMO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atx-1-RB | 75..1132 | 24..1063 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:08 Download gff for
FMO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xit-RA | 78..1135 | 24..1063 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:08 Download gff for
FMO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6821093..6821160 | 24..91 | 100 | -> | Plus |
| X | 6821216..6822130 | 92..991 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:02 Download gff for
FMO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6715126..6715193 | 24..91 | 100 | -> | Plus |
| arm_X | 6715249..6716163 | 92..991 | 95 | -> | Plus |
