FMO06135.5prime Sequence
1141 bp (1000 high quality bases) assembled on 2008-09-15
> FMO06135.5prime
CAGTCGACATGATGCAGGCGCTGACGATGCGGAGTTGGCTGGCAACGCTG
GTGACGGCGCTGCTGGCGGTGGCCATCTGGCCGGATCCGGGACAGAGTCT
GCCGCAAGGTGCTCCGGAAACCGTGTGCGACACCATGCTGCCGTTCCACT
CCGGCGGCAGTGTGCTACCCCAGAACAGTGTGTCGCCCTTCAGCGTGGAG
ACCTCTTCCTCGACACTTGGCCAGGGTCAGACGCTTCGCGTGGATCTGAC
GGGTGTGCCGGCGGGCTTAAGCTTCGGTGGCTACATGATCCAGGCGCGCA
ATCGGAATCCACCCCATCAGATCATCGGACAATTTGGACCCGCCCGCGAT
GGCACCATTAAGCTAATGAACTGCGAGAACTCCGTGAATAATTCAGCCAC
GCATAGCAATGCAGGACCCAAGCAGCAGGTTATCCTGGAGTGGCAATCAC
CAGTGGACTTTCTCGGCCAGGTGGTCTTCAATGCCACCATTGCCCAGAGC
TACAATGAATTCTGGGTGGGCGTGCCATCTCAGCCCGTTCAGATAGTCCG
TCGCGATCTGTCCGCTGCTCCACCACTACCCACACAGAGTCCATCTGCCC
CTGCGGGCACCACCCGTGCTCCCTATGTGCCGCCCAGCTATGTGGCGCCA
AAACAACGTGGTTGCCGTTTCCTCGGATCCCATCTACAATGGCTGCGGAC
AGAGCAAGAACTGTTTTGGATTCCCCGACGGTTGCGTGGCGACGAGAGCT
GTACCTCCATCACTGTGGTCACGGTGCGTGGAGATGTCTTCGAGTTTGAG
ATTCAGTCCGGCAAGGGAACCAATGCTGCTTACGTGGCAGTTTGGTCTTT
CTGATGACGCCAAGATGGGTGACGACTTGACCACCGAAATGTGTGCCAGA
GAATGGCCGGGTTAACCTGTATTCCTCCTTGACTTCGGCCTCTCCTAACT
CGGCATGAAACCCATGTGAACCAAAACTCTGCCCGCCTGCTGGACGCCTC
AATGTGGATGGAATGATCTACTGCCGTGTGCAAAGGATGCATGACCAATG
TCAGACCCACTTTGATCTTCGCATGGCAAGTACATCTGCTGGGTGCATCG
CAGCAGCCTTTAGGAAACAGGCTTGGCTCTCCAGACTGAAC
FMO06135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RB | 2342 | CG8399-RB | 137..1260 | 9..1120 | 5055 | 97.5 | Plus |
| CG8399-RA | 2315 | CG8399-RA | 137..1260 | 9..1120 | 5055 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16021904..16022376 | 9..481 | 2365 | 100 | Plus |
| 2R | 25286936 | 2R | 16022444..16022779 | 482..817 | 1585 | 99.4 | Plus |
| 2R | 25286936 | 2R | 16022837..16022974 | 816..955 | 585 | 97.9 | Plus |
| 2R | 25286936 | 2R | 16023065..16023134 | 968..1036 | 255 | 94.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:08 has no hits.
FMO06135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:01 Download gff for
FMO06135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 128..1265 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:11 Download gff for
FMO06135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 126..1263 | 1..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:02 Download gff for
FMO06135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 128..1265 | 1..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:02 Download gff for
FMO06135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16021895..16022376 | 1..481 | 99 | -> | Plus |
| 2R | 16022444..16022778 | 482..816 | 99 | -> | Plus |
| 2R | 16022838..16022989 | 817..968 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:01 Download gff for
FMO06135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11909400..11909881 | 1..481 | 99 | -> | Plus |
| arm_2R | 11909949..11910283 | 482..816 | 99 | -> | Plus |
| arm_2R | 11910343..11910494 | 817..968 | 95 | -> | Plus |
