FMO06139.5prime Sequence
1185 bp (960 high quality bases) assembled on 2008-09-15
> FMO06139.5prime
CAGTCGACATGGTGATTGAGAAGATCATTGGTGACCTGGAGTCCAACATG
ACGCTGGAGAACGAGGAGGCCAAGCGCAAGCTTGTGGAGTTGCTATCCCA
GAACAAGGAGCAGTGGGTGGTAAAGTTCATGCTGGACTACTTCTTTACAA
CTGGATCTCAGCGCATTTTGGAGGTACTGGTCAAAGCCCAGGCACCTCAC
GATGGGTACATCTTTGACAAGCTGGACGACTGCCTAAAGCAGTCGCAGCA
CCGAGTGCAGAGCCTCCAGGTGTTCTGCTTCATTGTGCGCCATCACCCTA
CTTGGCTGTACAAGATCGAGAAACACCGGCTGATCAAAAGTGTTTTTAAG
CTTATGACGCACGAGAAGGAGATAGTTCCGCTGATGAGCGCCCTGTTGTG
CATAATTACTCTGCTGCCGATCATACCGAATTCTGTGCCCAACTTTCTTA
ACGATCTGTTTGAGGTGTTCGGGCATTTGGCCTCGTGGAAGCTGCAGAAT
AGCAATAAACTGCCGGACGAGAAGCTCGTCCACCTGCAGTTGGGTCTACA
GATGCTATTTCACCGCCTGTACGGCATGTATCCGTGCAGCTTTATTGCCT
ATTTAGTGGAGTTCATCAAGCGAGGCAACGGCGGGGGCATCTTCCAGCAT
ACAATCAAGCCGCTGTTGAACACTGTGCGAGTGCATCCCATGCTGGTGAC
GGCCACGCCAGAGACTGAGGTAAACAAATACGCGATGGAAGGAGATGGAG
CCGCAATGACGTGGTTTATGGAGTGCGCCAACCTATCGCTGCCCGTCCTT
CTTGCCCGAGACGAGCAACGAAAGACGGCACTATGCGTATCCCATGACGC
AGGGATACAGTCGCATGACTTCAAATACCTCGAATAACGGACTACAGCTA
TCAGCTGGAGGGAAGTTTCAGCAATCGAGAAATGTCCTACACCCCGCTTC
ATTCGTTTGCCTCCGGGTGATGATGTGGTCCGATCGGGAGTCCGCCATAC
GAGAATGGCCACGACCAGTAGCGGCTAACCGCCTACTCCCACCACATCGA
TAATTTTGCCACTACCACCGGCATTGAACTCTCAGCCTTATGGTTGGCAT
GACTGTGCTCCTCACCGCCCAAAGCAGCTGTGGAAAGCCACAACCGGAAA
CACACCTTAGAGATATGAAGGATACAAGCAACCGG
FMO06139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsc1-RA | 3896 | CG6147-RA | 268..1436 | 8..1185 | 5020 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24131137..24131901 | 359..1134 | 2815 | 95 | Plus |
| 3R | 32079331 | 3R | 24130820..24131076 | 103..359 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 24130665..24130759 | 8..102 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:43 has no hits.
FMO06139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:14 Download gff for
FMO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsc1-RA | 261..1402 | 1..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:38 Download gff for
FMO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsc1-RA | 258..1399 | 1..1156 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:27 Download gff for
FMO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsc1-RA | 261..1402 | 1..1156 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:27 Download gff for
FMO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24130658..24130759 | 1..102 | 97 | -> | Plus |
| 3R | 24130820..24131076 | 103..359 | 100 | -> | Plus |
| 3R | 24131138..24131920 | 360..1156 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:14 Download gff for
FMO06139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19956542..19956798 | 103..359 | 100 | -> | Plus |
| arm_3R | 19956380..19956481 | 1..102 | 97 | -> | Plus |
| arm_3R | 19956860..19957642 | 360..1156 | 95 | | Plus |
