FMO06141.5prime Sequence
1146 bp (961 high quality bases) assembled on 2008-09-15
> FMO06141.5prime
CAGTCGACATGAACATGTACAACGGACAGATGAACGCCTTCGGAGGCGGT
GGCGGCGGAGGAGCTGGTGGCCTAGCCGGCGGTATGGTGCCCAATCGCAT
GGGCGGTGGTGCTCCCGGTGGCGGACCCGGCGGAGCGGGCATGTTCCAGC
GCAATCGCTCGGCCCCATACCCAGGTTTCAATGGTCATGGACCCGCCAAC
GGTGGACAGCGACGCATGAACGGTGGTGGTCCTAGCATGGGACCCGGCGG
ACCACGCAACCAGGATGGATTCGGTGGTCAGAACGGGGGCCAGCGCTCTT
CCAATCATGGCGCTCACTTGCCCAAGATCGTTTGGTCTGAGGTGAATCTT
ACGCCATTCCGCAAGAACTTTTACAAGCCGTGCGATTCGGTGCTGGCCAG
GACTGTCGGTGAAACAGAGACCTTCCTCACCAGCAATGAGATCACCATCA
AGGGCGATCAGGTGCCCACACCCAGTATTGAATTCGAGGAGGGCGGCTTT
CCCGATTACGTGATGAACGAGATCCGTAAGCAGGGTTTCGCCAAGCCAAC
GGCCATTCAAGCCCAGGGTTGGCCCATTGCTATGAGTGGACGGGATCTGG
TGGGCGTGGCCCAGACCGGATCGGGCAAGACCTTGGCGTATGTTCTGCCG
GCGGTGGTGCACATCAATAACCAGCCGCGCCTGGAGCGCGGTGATGGACC
CATCGCCCTGGTCCTGGCTCCCACTAGAGAGTTGGCCCAGCAGATCCAGC
AGGTAGCCATTGAGTTTGGCAGCAACACGCATGTGCGCAACACTTGCATC
TTTTGGTGGAGCGCCCAGGGACAGCAGGCTAGGGATTTTGAGCGCGGCGT
GAGATGTAATTGCCACACCAGGTCGCCTTAATGATTTCCTCGAGCGCGGC
ACCACCTTCGTTGAAGAGATGCACCTATCTGGTTGCTTGACGAGGCCGAT
CGTATGCTCGACTGGGCCTCGAGCTCCAGATCAGAAGATCATGCAGCAGA
TCCGACCGACCGTCAGTACTCATGTTGTCAGCTACCTGGTCCAAGAAGTT
GCGCCAGCCTGTCGAGAATTCCTTATAAACATCATACAGGTGAACATTGG
TTCGCTTTCCTGACGGCAATACACACATCCCTGAATCGGTGACTTG
FMO06141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RD | 3420 | CG10077-RD | 125..1253 | 9..1130 | 5020 | 97.1 | Plus |
| CG10077-RC | 3634 | CG10077-RC | 261..1389 | 9..1130 | 5020 | 97.1 | Plus |
| CG10077-RA | 3543 | CG10077-RA | 248..1376 | 9..1130 | 5020 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6954072..6955169 | 1109..17 | 4700 | 97.5 | Minus |
| X | 23542271 | X | 7929323..7929540 | 748..531 | 310 | 76.1 | Minus |
| 3R | 32079331 | 3R | 6004438..6004639 | 759..558 | 290 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:06 has no hits.
FMO06141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:32 Download gff for
FMO06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RA | 243..1376 | 1..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:45 Download gff for
FMO06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RA | 243..1376 | 1..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:47 Download gff for
FMO06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RA | 243..1376 | 1..1130 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:47 Download gff for
FMO06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6954049..6955172 | 14..1130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:32 Download gff for
FMO06141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6947149..6948272 | 14..1130 | 96 | | Minus |
