FMO06142.5prime Sequence
1172 bp (1043 high quality bases) assembled on 2008-09-15
> FMO06142.5prime
CAGTCGACATGAATGACATATTCACCAACTGCAAGTTGAAGAACGGTTTT
GGACCGAGCGTACAAGCGACAGCCGCAGCCACATCGCCCACGAAACGACC
CCTCAGCCCCGACCACCCAAACCCAGCGCTGCCCATCACCGAGACACCGA
GTCCTGCTATGAACCGCATGGGCTGGGCCCTACGCACACTACTCGTCGCC
GACAACTCGAGCTGTCTGAAGGATCGCAAGGTCTCCGGCAAGCTAATCCG
TAAGTGCGCCCCCGGCACCGAGCTCGTCGACTGGCTGGTCAACCTCTCGC
CCATCGTCCACACCCGAGCCCAGGCGGCTGGCATGTGGCAAGCGCTCCTC
GAGGAAGGAGTACTCGCACACGTCAACAAAGAGCAGCCCTTCAAGGACAA
GTGCTTCCTCTACCGCTTTCGCATCGACGAGGAGGGCGGCACGGCGGCAG
CGGGCGTGCCCCAGGCGGAGGACCTCGGAGCGGCCAACGAGCACATCCGC
GAGGCGCTCAGCGCACTCTTCCAGCGCGGACCGGACGCCACACTGCGTAT
GATATTGCGCAAACCTTCTCACGAACGGACATCGGAGGAGCTGGAGCTGG
TCTTCGAGGAACTGGTCCACATTGCCGCACTCTCCCACTTGTCGACCAGC
ATAAAGCGGGAACTGTCGTCGATTTTCGTGTTCGAGGCTCATGCCCAGGC
GGGAACAATATTATTCAATCAAGGCGACGAAGGACGCTCCTGGTACATCT
TACTCAAGGGATCGGTAGACGTTGTGATACACGGCAAGGGAACTGTTGCC
ACTCTGAAGACTGGGGATGATTTCGGGAAACTGGCCTTGATAAACGACGC
ACCCAGAGCTGCTACCATCGTACTGAAGGAGAACATTGCCACTTGCTGCG
CGTGGACAGGACACTTCAACCGGATACTGCGCGATGTGGAGGCCAATACT
CTGAGATGCAAGAGCACGGCAGGATGTTTTAGTGCTCGAGCGCGGGCTAG
CACGTGGACAGCATTCGGCATTTAAATATACGTGATGTCGGGACTCCGCC
AGATGCTGAGCACCTTGCTGGAGACGCGACTGGCAGTCGTGGGTGGAATG
AATCCGTTCTTGACCACTCTGCTCACCACATGTTTTATTGCCGTCGTCAC
TGGTGTGAGATTGCCAATACTC
FMO06142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Epac-RG | 3662 | CG34392-RG | 343..1502 | 9..1147 | 5175 | 97.6 | Plus |
| Epac-RF | 4043 | CG34392-RF | 724..1883 | 9..1147 | 5175 | 97.6 | Plus |
| Epac-RE | 6597 | CG34392-RE | 1080..2239 | 9..1147 | 5175 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6768122..6768315 | 565..372 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 6767415..6767560 | 711..566 | 730 | 100 | Minus |
| 2R | 25286936 | 2R | 6767051..6767195 | 856..712 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 6768369..6768512 | 372..229 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 6765935..6766114 | 1025..854 | 510 | 93.3 | Minus |
| 2R | 25286936 | 2R | 6768926..6769024 | 143..45 | 495 | 100 | Minus |
| 2R | 25286936 | 2R | 6768577..6768667 | 232..142 | 455 | 100 | Minus |
| 2R | 25286936 | 2R | 6769306..6769344 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:41 has no hits.
FMO06142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:32 Download gff for
FMO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Epac-RE | 1074..2221 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:49 Download gff for
FMO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Epac-RD | 702..1849 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:58 Download gff for
FMO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Epac-RE | 1074..2221 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:58 Download gff for
FMO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6765935..6766111 | 857..1025 | 94 | <- | Minus |
| 2R | 6767051..6767195 | 712..856 | 100 | <- | Minus |
| 2R | 6767415..6767560 | 566..711 | 100 | <- | Minus |
| 2R | 6768122..6768314 | 373..565 | 100 | <- | Minus |
| 2R | 6768369..6768510 | 231..372 | 100 | <- | Minus |
| 2R | 6768579..6768665 | 144..230 | 100 | <- | Minus |
| 2R | 6768926..6769023 | 46..143 | 100 | <- | Minus |
| 2R | 6769308..6769349 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:32 Download gff for
FMO06142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2653440..2653616 | 857..1025 | 94 | <- | Minus |
| arm_2R | 2654556..2654700 | 712..856 | 100 | <- | Minus |
| arm_2R | 2654920..2655065 | 566..711 | 100 | <- | Minus |
| arm_2R | 2655627..2655819 | 373..565 | 100 | <- | Minus |
| arm_2R | 2655874..2656015 | 231..372 | 100 | <- | Minus |
| arm_2R | 2656084..2656170 | 144..230 | 100 | <- | Minus |
| arm_2R | 2656431..2656528 | 46..143 | 100 | <- | Minus |
| arm_2R | 2656813..2656854 | 1..45 | 91 | | Minus |
