FMO06143.5prime Sequence
1155 bp (1013 high quality bases) assembled on 2008-09-15
> FMO06143.5prime
CAGTCGACATGATCAATATCGCTGGCGTGGTGAGCATCGTGCTCTTCTAC
CTCCTGATCCTGGTCGTTGGCATTTGGGCCGGTCGCAAGAAGCAGTCCGG
CAATGATTCGGAGGAGGAGGTCATGCTGGCCGGACGCTCCATCGGCCTCT
TCGTGGGCATCTTCACCATGACGGCCACCTGGGTGGGTGGCGGCTACATC
AACGGCACGGCGGAGGCTATATACACATCGGGTCTGGTGTGGTGCCAGGC
TCCATTTGGATACGCTCTAAGCTTGGTATTTGGTGGCATCTTCTTTGCCA
ATCCCATGCGCAAGCAGGGTTACATCACCATGTTGGATCCGTTGCAGGAT
TCCTTTGGTGAGCGGATGGGAGGATTGCTCTTCCTGCCCGCTCTATGCGG
TGAGGTCTTTTGGGCAGCCGGCATCCTGGCTGCACTTGGCGCCACTCTAT
CGGTGATCATCGACATGGATCACCGCACCTCGGTGATCCTGTCCTCCTGC
ATCGCCATCTTCTACACACTGTTCGGTGGACTGTACTCCGTGGCGTATAC
GGACGTGATCCAGTTGTTCTGCATCTTCATCGGTCTGTGGATGTGCATTC
CCTTCGCCTGGAGCAACGAGCACGTGGGCAGCCTGAGTGACCTGGAGGTG
GATTGGATTGGGCACGTGGAGCCTAAAAAGCATTGGCTGTACATAGACTA
CGGCTTGCTGCTCGTCTTTGGTGGCATTCCCTGGCAGGTCTACTTCCAGC
GGGTGCTGTCCAGCAAACGGCAGGAAGGGCCCAGCTTCTGTCCTATGTTG
CAGCCGCCGGATGCATTTTGATGGCCATTCCCCCGGTGCTCATCGGAGCG
ATTGCCAAGGCTACACCTTGGAACGAGAACAGATTACAAGGGACCCTATT
CCCCTGACCGTGACGAGACGAGCATGATTCTGCCCATGGTGCTGCAGTAC
CTCACGCCTGACTTCTGGTCTTCTTTGGATGGGGCGCTGTTCCGCCGCGT
AGATGTCCTCGCCGACTTCTCGGTGCTCTTCGCCGCTTCATGTTCGCTCG
GAACGTGGTACAATTGATTTCCGTCAGAGGCGTCCGAAATGAATTATTTG
GGTGAGGCGATGCCTCATGTGTGGCATCTGACTAACATCATGGCCCTCCA
ATCCT
FMO06143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7708-RB | 4748 | CG7708-RB | 827..1981 | 9..1148 | 5065 | 97.1 | Plus |
| CG7708-RA | 3299 | CG7708-RA | 827..1981 | 9..1148 | 5065 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18682788..18683373 | 282..866 | 2880 | 99.8 | Plus |
| 3R | 32079331 | 3R | 18682440..18682715 | 9..284 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 18683500..18683754 | 863..1110 | 515 | 89.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:24 has no hits.
FMO06143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:05 Download gff for
FMO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7708-RA | 822..1877 | 2..1057 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:51 Download gff for
FMO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7708-RB | 1301..2356 | 2..1057 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:55 Download gff for
FMO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7708-RA | 824..1879 | 2..1057 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:55 Download gff for
FMO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18682437..18682713 | 2..282 | 98 | -> | Plus |
| 3R | 18682789..18683373 | 283..866 | 99 | -> | Plus |
| 3R | 18683504..18683697 | 867..1057 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:05 Download gff for
FMO06143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14508159..14508435 | 2..282 | 98 | -> | Plus |
| arm_3R | 14508511..14509095 | 283..866 | 99 | -> | Plus |
| arm_3R | 14509226..14509419 | 867..1057 | 92 | == | Plus |
