FMO06144.5prime Sequence
1162 bp (1021 high quality bases) assembled on 2008-09-15
> FMO06144.5prime
CAGTCGACATGACGCCATGTTTATTTTCAGACGATTTATCGCTGTTGGGA
GAAGTGACTGAAAATAACTACGACAATAATATTGTACACGACATTCTGAA
CTCATCAGCATTCTACAATGATACATCGTTAGATCTAAGTGAATTAATAC
CTGATCTTCAAAAAGAAGCCTTTGGATTGCATTTCTCGTCAAACCCAATA
ACTTCAGAATTTAGCTTGAGTTCCCCGATTTCTGGTTTGAAACAAATTCC
TTCAGCGTGTTCTGGTGAATTTAAAAGAAATGTAAATGACAATAATTTTC
AATTGGATCTTACCAACAGTAGAAATGATTTACCTGAGCCTAATTCGTCT
CCCACAAGAAGCTTAAATCGTTCAAATGTAAATGGATGTTCTAACGAAGA
GGCGGTCTATCCACTCTTAGTCGATTCAGATAAGTTTGATCCATTTTTTG
AACCTGCTAAAGTTCGGAGCCCCAACAAAGAATTCAACAGCACGATTTCT
AATCTATCAGATATAAAAAACGAACTTCCGGAAACTTCCCAAGACTTGGG
TTTTAATTCATATAACACTTCAAGGAATAATTCAACTTTAACCAAAAGCT
GGCCAATAAATACTGAGCTGAATCTAGATAATCAAGTTCCAAAAACAGTT
TTACCTTTGTCAAGGACAATTTATTTACCTTCACATGATTACAAAGGGCT
TTTGCCAACAGTGAAATGTAACGGTGATAGAACCTTAAAGAAAAATGTTA
ATGTCAGGTCTAAGATTTCTAATATCGTTATTAAGAAAAAAAATGCAACT
TTTATACAATCATTGAAAGAAAGCACTCCATCACATACAATGGATGATAA
GATCTACAAAAAATATCAACGTATGATTAAGAACCGAGAGTCTGCTTCCT
TATCACGCAAAAAAAGAAAGGAGTATGTTGTTTCATTAGAGACTCGATAA
TAAACTTGAAAAAGAATGCGATCCCTAAAAGCTGAAAATAATAACATTAC
GGGATCAAAATATTTCTGCTTGCACTTCTTGTCAGCGTGAATTCTGGAAA
TGCAAATGGTCTTTACATACTTATTCAGGATCTGACCGAAGCGTAAATAA
ACCGAAGATTACTCAAGGCAGCCATGCATAAAATATACCCAGGCACCAAT
GAAAAAGTAACC
FMO06144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atf6-RB | 3959 | CG3136-RB | 1014..2108 | 9..1101 | 5200 | 98.7 | Plus |
| Atf6-RA | 3076 | CG3136-RA | 131..1225 | 9..1101 | 5200 | 98.7 | Plus |
| Atf6-RC | 2488 | CG3136-RC | 127..1199 | 31..1101 | 5090 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5148179..5149157 | 9..984 | 4765 | 99.6 | Plus |
| 2R | 25286936 | 2R | 5152795..5152905 | 991..1101 | 275 | 91.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:07 has no hits.
FMO06144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:22 Download gff for
FMO06144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 125..1244 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:52 Download gff for
FMO06144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RB | 1007..2127 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:52 Download gff for
FMO06144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atf6-RA | 125..1244 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:52 Download gff for
FMO06144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5148172..5149156 | 1..983 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:22 Download gff for
FMO06144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1035677..1036661 | 1..983 | 99 | -> | Plus |
