FMO06145.5prime Sequence
1165 bp (1051 high quality bases) assembled on 2008-09-15
> FMO06145.5prime
CAGTCGACAATGCCGGAGAAGCTGTTGAAAATCACCTACCAGGGCGCTGG
ACCCCAGAAAAAGATAAATGCATACCTGCGGATGCCCTCCCAGAATTACA
CCATATTGCGTCGCGAAATCGAGCTGTATCTTTTCCAGGAGCGCCAGTTA
CCCAAATGCGACGTAAGGACCTTCTGGATCGACGCTGATAAAGATGAAAT
CGAAATAGTCAACCAAAATGACTATGAGATTTTCCTGGCCAAGTGCGAGA
GCAATATGCACGTTCAGGTGGCTCCACTGGCGCCCGTAGAGGAGCCAAAG
GCCACCAAGCAAGAGGGTTCTTCGGCCAACGCTGAAGCTCCTTCTGTCGA
CGATCCGAGCAATTTCACCATCCACGACGCCGTTGAATGCGATGGCTGCG
GCTTGGCTCCCTTGATTGGGTTCCGCTACAAGTGCGTTCAGTGCAGCAAC
TATGATCTTTGCCAGAAATGCGAGTTGGCTCACAAGCATCCTGAGCACTT
GATGCTACGCATGCCGACCAACAATGGACCCGGTATGGTCGATGCCTGGT
TCACAGGTCCAGGATTGGGACGCCGCAGTGGCCGGCGCTCCAGGGGACAT
TGCCCGTTTCAGGAGACGAACCAGGCAGATCCTGCTGGCGAACCCGCAAG
GGATAGTCGCCGTGAACGGCGTCAGGCCCGCCGCCATGCCGGAGTCTTGA
CTCAGTTTGTCGAGATGATGACCAACTTGCCGCTGAACACAACAACGGCC
ACGGCACCAGCCGAACCGCAGAAACCGAAGGCTGCAGAACAAACTGAAAG
TCCTCCACAAGCTGAGCCCACTGTTACCGCTGAAAAGGCAGCTGAATCCG
AGGCCAAACCAACTGAGCCGAAGAGTTAACACTGATCAAAGTGTCCCTAG
AACCGAAGATCCAGTGACGACTCCACGTTCCACTCAGCCAACTACTCCAG
TGATTATCTGGATAAATTTCGCAGATTGTGCCACCGGAGTACATGGGTGC
TGGCATCGAAATCCTTATAACTTCAGCGAAATGTTTTCCAAGAATATCGA
ATACACTGAGGGCGGTGATTCGGGAATTTTGCCGCCCTCAACGACTTCCA
TGCTGAAAATAGAAACAGAAAGACAGGTCATCAATGACAGTCGGGGGCAT
TCTAGTCACGTCCTG
FMO06145.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ref(2)P-RB | 2395 | CG10360-RB | 345..1463 | 5..1116 | 5265 | 98.5 | Plus |
| ref(2)P-RA | 2305 | CG10360-RA | 345..1463 | 5..1116 | 5265 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19543619..19544543 | 181..1100 | 4275 | 98.5 | Plus |
| 2L | 23513712 | 2L | 19542812..19542988 | 5..181 | 870 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 19:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 1921..1976 | 686..744 | 116 | 71.2 | Plus |
FMO06145.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:12 Download gff for
FMO06145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ref(2)P-RA | 340..1505 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:54 Download gff for
FMO06145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ref(2)P-RB | 168..1333 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:01 Download gff for
FMO06145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ref(2)P-RA | 340..1505 | 1..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:01 Download gff for
FMO06145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19543620..19544546 | 182..1104 | 98 | <- | Plus |
| 2L | 19542807..19542988 | 1..181 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:12 Download gff for
FMO06145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19542807..19542988 | 1..181 | 97 | -> | Plus |
| arm_2L | 19543620..19544546 | 182..1104 | 98 | <- | Plus |
