FMO06147.5prime Sequence
1147 bp (1022 high quality bases) assembled on 2008-09-15
> FMO06147.5prime
CAGTCGACATGGAGTTACTGCTGCTGTTTATGCTAGCACTTCAACTTATA
GAATCCAGCATCGGAAGTAAAGATGTACCAATTCACCAAATTGAATCTAT
AGTTGGTGAAAATATTTATCTTCCTTGCAATGTAACAACTTATGATGGTG
ATGAACCTGTGCTGGTTCTGTGGTACCGAGATGATAAGGGTACTCCAATT
TACAGCATTGACATTCGAGCTGGAGTATCCAAAGCACCGAAAAGATGGTC
GGACGACTCCGTATTTGGGGATAGAGCATATTTTATCTTTGACAAGGAAC
CGGGAAAACTGTCAATTCAGAATACGCAAGCATCCGACTCCGGAACTTAT
AGATGTCGCGTGGACTTCCTGAAAGCGCAGACCATAAACAGCCGCATTAG
GCTCAATGTCATATCTCCACCCAAACAAGTTATTATTCGAGACAGCTCCA
ATGTTGAGCGTTCTACAGTTGTGGGACCATATAGCGAAGGCGACATCGTA
TCCCTGAAATGCCAAGTAATTGGAGGCTATCCCACGCCCACAATCAGTTG
GTATCGCGATGGCATAGAAATTCCATGCGAATTGTCTCATTTGGCAGGCG
GCAAAATTATAGAATGCGAAATCACGCTACCGTCTCTGGGTCGGGAGGAT
CTTAACTCCCGGCTGACCTGTCGTGCACTGAGTCACCCCCGGGCACCCAT
CGTCGAAGCGGTGGTTCAAATCGATATGAATTTTGCCCCTTTAAACATCC
GACTGTTGGGGGCACATCAACCATTGTCTGCTGGACGCAGATACGATCTA
TTGTGCCAAAGTGCTGGCTCCCGGGCCGCCGGCCGTAATTACTTGGTGGC
AAAATGTGCATACGGCTGGAGAAGACACCGAAACGACTTCAAGCGATGGC
AACCAGACCACAAGCACTCTTCTCAATCAGCCTAAGCAATCAGATGCGGG
GAAAGTATTTATCATGCAAAGCCTACACCATGCCGTTCCTCCGAGCCCCT
GGAAGAATGGCTGGAAATTAGATATACAATAATGTCCCGGAAGCGGTACG
TCGTTTGCAACATCTCTGGATCCGAGCCACTTACGAGAGAACGAATGTCT
ACTTTGATTGCTGGGTATGGCCATTCAATGTCTTGGCATGATGGCCT
FMO06147.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12950-RB | 4429 | CG12950-RB | 658..1789 | 7..1134 | 5105 | 97.6 | Plus |
| CG12950-RA | 3598 | CG12950-RA | 658..1789 | 7..1134 | 5105 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9738520..9738730 | 414..204 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 9737994..9738202 | 732..524 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 9738821..9738951 | 205..75 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 9737761..9737903 | 877..733 | 610 | 97.9 | Minus |
| 3R | 32079331 | 3R | 9738278..9738389 | 526..415 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 9737540..9737685 | 1030..885 | 445 | 96 | Minus |
| 3R | 32079331 | 3R | 9739254..9739322 | 75..7 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:44 has no hits.
FMO06147.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:36 Download gff for
FMO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12950-RA | 652..1782 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:30 Download gff for
FMO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12950-RA | 602..1732 | 1..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:43 Download gff for
FMO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12950-RA | 652..1782 | 1..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:43 Download gff for
FMO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9737540..9737684 | 886..1030 | 95 | <- | Minus |
| 3R | 9737752..9737903 | 733..885 | 97 | <- | Minus |
| 3R | 9737994..9738200 | 526..732 | 100 | <- | Minus |
| 3R | 9738279..9738389 | 415..525 | 100 | <- | Minus |
| 3R | 9738520..9738728 | 206..414 | 100 | <- | Minus |
| 3R | 9738821..9738950 | 76..205 | 100 | <- | Minus |
| 3R | 9739254..9739324 | 1..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:36 Download gff for
FMO06147.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5563474..5563625 | 733..885 | 97 | <- | Minus |
| arm_3R | 5563716..5563922 | 526..732 | 100 | <- | Minus |
| arm_3R | 5563262..5563406 | 886..1030 | 95 | <- | Minus |
| arm_3R | 5564001..5564111 | 415..525 | 100 | <- | Minus |
| arm_3R | 5564242..5564450 | 206..414 | 100 | <- | Minus |
| arm_3R | 5564543..5564672 | 76..205 | 100 | <- | Minus |
| arm_3R | 5564976..5565046 | 1..75 | 94 | | Minus |
