FMO06148.5prime Sequence
1155 bp (1034 high quality bases) assembled on 2008-09-15
> FMO06148.5prime
CAGTCGACATGGAGATCAGGCGCACCTCTCGACCATATCTTTGGTACACA
CCAGTGCTGATGCTGCTCGGCCTTTGGCTGGGTTCGGTTTTGGCCAAGGG
CGCTAGCAATCAGTCGGCCACTACCAACTCACACGCCTGGCAGCGATATC
ACAGTCAGGCACTCAATGCGTCGCCAGCGCTGCCCGATGAATTGGAAATA
TTGGATGCCCCCTCTACGATTGAGATACATTCGCCTCATGAAACCCATTT
GACACGCACCTCCGTCATTTTCGGACTGACCAAAGTGGCCAACGAGAGCA
GCGTCAGCCAAAAGTGCCACGCGCAGCTGCGACAAATGCAGCGCGGCATA
CTCGGCAAACAGCCATGGGCCATGAAGGTTCTGGATGCTTCGGGAACAAA
GCCCTCCGGCTTTGTATATGGTCAAAACTACTGGCTGGGAAGTCGCGAAG
CTTGTCGCGGCGTCCAAAGACCCGTGGGCATAACCCTATCAAAGAACTTC
GATCGTGTTATGCACTATGGAATTATCACCCAGCAGGCGCCCTTCGACAT
GGACTATCGGGTTTTATACCTACGTCACAATTCTCCGTGGCAAGTGGAGA
TTAAGCTGATGTCTGAGCAGATTATACACATTGGCCTGTGCCTGCCAAGT
GCCTGCAGTTCGGTTGAAGTTCAGAGTCTGGCCCAGGACTATGTGGCTGG
CGGAATGTTCACTGAAAACGAGATATTCGACATAAAGCCGGAAGTGGTTT
ACATGAAGATCTGCAGCTGAAGGATGAATTCTTCGAGAGGGCCAGCTTTC
GTCTCTTGGTGGCCTGTGTTCTGCTCACTGTCACTCTGATGTTTTGTGCT
CAACAACTGCATGCGACTAGTAAAATGCCATCTATTCTGTGGATCCTCTG
GATCGTGACTTGCCCCCCGCGGAATCGGAAATATGGCGTGACTTAACTCC
CTGCTCCAAATAGAGAGACTGCAGCGATATGTAACTGCTGGGAATGTTCC
CGGCATTGGGCCAAAATTTTGCGATTAGGAGATACTGGCTATGAAATTCC
CTGATGATGCCTGCAATCTGATGCGCTATCTGGATCAATGTCTTCATGTG
GATATGTTCAGTTACCTTAACTACCAAATAAAGACGGGGCTGATCGAATG
CCGAA
FMO06148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11353-RB | 3115 | CG11353-RB | 578..1739 | 8..1155 | 5080 | 96.9 | Plus |
| CG11353-RA | 2910 | CG11353-RA | 373..1534 | 8..1155 | 5080 | 96.9 | Plus |
| CG30471-RB | 2435 | CG30471-RB | 285..806 | 237..758 | 540 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4536889..4537535 | 378..1020 | 2930 | 98.3 | Plus |
| 3L | 28110227 | 3L | 4535993..4536363 | 8..378 | 1855 | 100 | Plus |
| 2R | 25286936 | 2R | 15535596..15535970 | 384..758 | 345 | 72.8 | Plus |
| 2R | 25286936 | 2R | 15535384..15535525 | 237..378 | 200 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:21 has no hits.
FMO06148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:08 Download gff for
FMO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11353-RA | 367..1487 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:32 Download gff for
FMO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11353-RB | 563..1683 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:20 Download gff for
FMO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11353-RA | 367..1487 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:20 Download gff for
FMO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4535987..4536363 | 1..378 | 98 | -> | Plus |
| 3L | 4536890..4537633 | 379..1110 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:08 Download gff for
FMO06148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4535987..4536363 | 1..378 | 98 | -> | Plus |
| arm_3L | 4536890..4537633 | 379..1110 | 96 | | Plus |
