FMO06149.5prime Sequence
535 bp (184 high quality bases) assembled on 2008-09-15
> FMO06149.5prime
GATAGCCCGCTGGAGTGGAGGCTGGTCAGCCGGGTAAAAAGCGAGATATT
GGAACAACGACATCGAGTTCCTCATGTCCTGCATCGCACTGAGCGTGGGT
CTGGGCAATGTGTGGAGGTTTCCCTTTACCGCACTGGAGAACGGAGGAGG
AGCGTTCGTGATACCCTACCTGATCGTCCTGATTCTAGTGGGCAAGCCCG
TGTACTACTTGGAAATGCTGCTCGGCCAGTTCTCGAGTCGCGGCAGTGTG
AAGGTCTACGACTTTTCACCCATCATGAGAGGCATTGGATATGGACAAGT
CCTGGCCACGGGCATCGTTACCACCTACTACGCCACGTTAATGGCGCTCA
CCCTACGCTACTTCGTGGACTCCTTCTACCCGACCTTGCCGTGGAGCTAC
TGCCGCGAGGAGTGTGGTACAGAATGCCTGGACTCGGGAACCGCAGGAGG
CCAGCAAAGCCACCAGTTTGGCAGGGTCGGGGAGTGCGAACCACCCTCGG
GCGGAGTTCTATTTCACGAACATCATTCTGCGCGA
FMO06149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1698-RB | 2246 | CG1698-RB | 427..959 | 1..535 | 2505 | 98.5 | Plus |
| CG1698-RA | 4106 | CG1698-RA | 2287..2819 | 1..535 | 2505 | 98.5 | Plus |
| CG4476-RB | 2400 | CG4476-RB | 521..738 | 65..282 | 475 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9795622..9795895 | 10..282 | 1320 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9796296..9796530 | 280..518 | 970 | 96.7 | Plus |
| 3L | 28110227 | 3L | 9212984..9213201 | 65..282 | 475 | 81.2 | Plus |
| 2L | 23513712 | 2L | 14848711..14848890 | 244..65 | 240 | 75.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:00 has no hits.
FMO06149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:19 Download gff for
FMO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1698-RA | 2287..2818 | 1..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:02:59 Download gff for
FMO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1698-RA | 2270..2801 | 1..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:34 Download gff for
FMO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1698-RA | 2287..2818 | 1..534 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:34 Download gff for
FMO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9795612..9795894 | 1..281 | 99 | -> | Plus |
| 2R | 9796298..9796529 | 282..517 | 97 | -> | Plus |
| 2R | 9796585..9796601 | 518..534 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:19 Download gff for
FMO06149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5683117..5683399 | 1..281 | 99 | -> | Plus |
| arm_2R | 5683803..5684034 | 282..517 | 97 | -> | Plus |
| arm_2R | 5684090..5684106 | 518..534 | 100 | | Plus |
