FMO06150.5prime Sequence
692 bp (266 high quality bases) assembled on 2008-09-15
> FMO06150.5prime
CAATCGGTGGAGGACGGAAAAGGACGTTGGATCCCATGGTTCCCAAAGTG
GGCGTAGCTGCATCTGCTGGATATCCGTGGTACTCCTACTCATTCTGGTG
CCTGATTTTATTGAAGCACTCAAGGATGTGTCGGTAATGATACCGCAGGC
GGTGAAACGTGGCAGCAATGCGCTATTCACTTGTAATTACGATATGGAAA
ACGATACTCTATATTCGGTTAAATGGTATAAGGGCAAGCGTGAGTTTTAT
CGCTATACGCCCAAGGAGAATCCGGCGATGAAGGTCTTTGCCATGACAAG
TGGTCTCAATGTCGAGCGCAACCTTTCGAATCAGAGCCACGTCGTCCTGC
AGTCGGTGCCGCTGAATATTTCGGGGAAATTTACATGCGAAATATCGGTG
GAGGCGCCCACTTTTCAAACGGCCATGGTGTCCGGCGAAATGGAGGTGGT
TGAGCTGCCTGAAGAGCACACTGTGGTTACCGGGATACAGGCACGTTATC
GCATCGGCGATTTGGTCGACGGCAATTGCTCAATTAAATACTCTAAACCG
GCTGCTAATTTGACATGGACTATTTATGGTATTGTGGTCCTCCGCATCAC
ATAAAGACCTACCAGACGGAGAGCGTGAGAAAGCACCTGTAATCGGTACA
AGTGCCATACATTTCATGGTCACCAACACATTTCCTCAAGGC
FMO06150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-Ic-RC | 4695 | CG4838-RC | 968..1665 | 1..691 | 3225 | 98.1 | Plus |
| beat-Ic-RB | 4924 | CG4838-RB | 1197..1894 | 1..691 | 3225 | 98.1 | Plus |
| beat-Ic-RA | 3399 | CG4838-RA | 968..1665 | 1..691 | 3225 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16032379..16032591 | 104..316 | 1065 | 100 | Plus |
| 2L | 23513712 | 2L | 16034186..16034323 | 315..452 | 690 | 100 | Plus |
| 2L | 23513712 | 2L | 16034579..16034715 | 452..588 | 640 | 97.8 | Plus |
| 2L | 23513712 | 2L | 16014185..16014288 | 1..104 | 520 | 100 | Plus |
| 2L | 23513712 | 2L | 15908107..15908216 | 276..167 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:18 has no hits.
FMO06150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:24 Download gff for
FMO06150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ic-RA | 968..1665 | 1..692 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:07 Download gff for
FMO06150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ic-RA | 951..1648 | 1..692 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:44 Download gff for
FMO06150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-Ic-RA | 968..1665 | 1..692 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:44 Download gff for
FMO06150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16014185..16014288 | 1..104 | 100 | -> | Plus |
| 2L | 16032380..16032591 | 105..316 | 100 | -> | Plus |
| 2L | 16034188..16034323 | 317..452 | 100 | -> | Plus |
| 2L | 16034580..16034713 | 453..586 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:24 Download gff for
FMO06150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16014185..16014288 | 1..104 | 100 | -> | Plus |
| arm_2L | 16032380..16032591 | 105..316 | 100 | -> | Plus |
| arm_2L | 16034188..16034323 | 317..452 | 100 | -> | Plus |
| arm_2L | 16034580..16034713 | 453..586 | 97 | -> | Plus |
