FMO06151.5prime Sequence
1135 bp (1005 high quality bases) assembled on 2008-09-15
> FMO06151.5prime
CAGTCGACATGAGCTGCTTGGTCGGGAACCGAAAGCGGAACAGCGGCAGC
ACGGCGGACGAATTCGACAAGGTCAGCACTTTGGCCAATGCCGATGATAC
CGAGTGCGTATCGCCGGATCCGGGGCGGGAGCCGGAAAGCAACAAACCGG
ATTCGCAGACGGAGCCTGAGTTTGGCCATTTGAATGAGACGCGGAGGAAG
ATTCTCGATGCCATTGCTGCTTTAAATGATGATAGCTTCGATAAGCGCAT
GGCCCGGTTGCTCATGCAGTACGAGGGCGCCATTCGGGAAGAGTTTCAGC
GGGCACAGTATTTGCCCCAGAAGTGCCGCAAGCTGGCGCGAATCCTAACC
GGCCTCACTGATGTCATCCACACTATGGTTCAGGGTCGAGCGCTGCAGCG
GGACGAGAGCTACAGGCAACGCATGTGCAATATTGTTGGTTTCTACATAT
CCTGCGAACTCTGTTCCGCTCAGGAGCCGGTGGAGAAGGAGGAGACCATC
ATCAACAGGATTAACAGCTGCCTGAAGCTCTACGTGGAGTACGGAGATGG
TGGCGCCGGCGTCCACCGGGAGCACGTGCTGCGCACTCTCCTCGCTGCAC
CCAAGCTCTTCAACAGAGCTAGCATTTTGTCCATGCTGTACAGCCGCCTC
TTTCCCCACTGGTCCGTTCCCAGCGTTATGATACAAGCAGAACTGCCAGA
TAAACTCTACATTGAATACATACTCATATTTTACTACTGGCAGCGTCTGG
AGTCGGATGAGTCAGTCAAGGAGCGCATCGTGCAGTTCGCCGAAAAGTTT
CATGAGGCCCTCAAGATCACTGGCCATAAAAAGTGTCTATGCTCATTACT
TGCCAAAGTTTACGGACCAGATGCCGCCACGCGGACATATTGAATCATCT
GCAAATGAGCAGTTGCACAAGTTTGCATGTGTCAGCAGTGACATCGACGC
CCCAGTCCAACGAAGTGGTTCTCAGTTCTGATGATGAGACAGCTGCCCGA
TGTGGGACTATCGGTACGCCGACTCATCAATTACAATCATCGCCCGTTTC
TTCAGAATCTCTGTCAGAATGCTCGCAGTGAGCCGGGCAAGCGTGCACGT
TTTGTTACGGGCATTGACACACTCATGGAAATGTA
FMO06151.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12316-RA | 4329 | CG12316-RA | 465..1607 | 8..1129 | 5065 | 97.4 | Plus |
| CG12316-RB | 3921 | CG12316-RB | 57..1199 | 8..1129 | 5065 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15135606..15135972 | 643..277 | 1835 | 100 | Minus |
| 3L | 28110227 | 3L | 15136032..15136301 | 277..8 | 1350 | 100 | Minus |
| 3L | 28110227 | 3L | 15134932..15135223 | 931..641 | 1300 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:12 has no hits.
FMO06151.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:04 Download gff for
FMO06151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12316-RB | 51..1163 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:02 Download gff for
FMO06151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12316-RA | 457..1566 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:52 Download gff for
FMO06151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12316-RB | 51..1163 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:52 Download gff for
FMO06151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15134890..15135220 | 644..967 | 96 | <- | Minus |
| 3L | 15135606..15135971 | 278..643 | 100 | <- | Minus |
| 3L | 15136032..15136304 | 1..277 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:04 Download gff for
FMO06151.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15127990..15128320 | 644..967 | 96 | <- | Minus |
| arm_3L | 15128706..15129071 | 278..643 | 100 | <- | Minus |
| arm_3L | 15129132..15129404 | 1..277 | 98 | | Minus |
