FMO06152.5prime Sequence
860 bp (846 high quality bases) assembled on 2008-09-15
> FMO06152.5prime
CCTATACGAGGTTATCAGTCGACATGCGCGCAGAGCGATCAAAGTCGCTG
GATCGTGAGGAGCGTGGAGCACGCGGGCAGGATCGTGATCGAGGCAAAGA
TCAGGATCGAGACCGCAGCCGTAACAATTTCGGTTGGTCAAAGAAGCAGG
CACCGCCTACATCGCGTAGTGGTCGCATTGTCAAAGGACGCGGAGTGTTT
CGCTTTCGCACCCCGTCGCGTAGTCGTTCGCGCAGCACTACGCCACCTCA
CTGGAAGCATGCCCAGAAGCGCACCATCAAGTTGTCCGACTTGGAGCGCA
TTGAGGAGGAGAGCAAGATGCGCGAGGAGGAGATGAAGCGGCGCGAGCAT
GAGAGAAAGCGTCGCCACGAGGAGGCCACAAAGAATCCTAAGCAGTCCTT
TTTCGAGCTATCCCATGCCAGCACTTACGGTGGCAAAATAACTCCGGATC
GATTCTCTCCAGAGCACAAAGCCAAGTCGAAGGACACCGCAGACCGCGGT
AAAGCCAAGGAGAGAGAAAAGGCTGGCGAGAAGGATAAGGCTAGGGATGT
GACTCCTGTAAAACGCCGCAAGTCGATGGACATGAACGCCTTGGACTACG
AGCAGCAGACAGAATCCCGAAGTCGAGTCCGAGGACGAGGAGCAGTTGAA
GGTGAAACCACCAAGCAAGCATGATATCAGAGTGGAGCCATCGACCAGCA
AGGATCGCAACGCGAAACGCGATGAGCGCAAGCCCACCGAGGAGAAGGCC
AAGCCAAAGCGCAGCCGTTCCCCGGAGCCCTCGTCGCCAATCTCCTGCTC
GTCGTCAGCAACGCTCCCCTGCCCGACGTCCTGGCCAATACTACATCCTA
ACCAGATTCA
FMO06152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RC | 3893 | CG1866-RC | 1682..2517 | 24..860 | 4025 | 98.9 | Plus |
| Moca-cyp-RB | 3726 | CG1866-RB | 1515..2350 | 24..860 | 4025 | 98.9 | Plus |
| Moca-cyp-RA | 3168 | CG1866-RA | 957..1792 | 24..860 | 4025 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28343135..28343777 | 201..845 | 3080 | 99.2 | Plus |
| 3R | 32079331 | 3R | 28342898..28343074 | 24..200 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:41 has no hits.
FMO06152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:33 Download gff for
FMO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..1791 | 24..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:04 Download gff for
FMO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RB | 1496..2330 | 24..859 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:59 Download gff for
FMO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 957..1791 | 24..859 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:59 Download gff for
FMO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28342898..28343074 | 24..200 | 100 | -> | Plus |
| 3R | 28343135..28343792 | 201..859 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:33 Download gff for
FMO06152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24168620..24168796 | 24..200 | 100 | -> | Plus |
| arm_3R | 24168857..24169514 | 201..859 | 98 | | Plus |
