FMO06153.5prime Sequence
1073 bp (849 high quality bases) assembled on 2008-09-15
> FMO06153.5prime
CAGTCGACATGTGGAGCAGGCAGCGAATGCGCCATAAGCCGCTTTGGGCC
CTAATATCCTTGACCGTTTTGCTGCTGGTCCTGGACAAAAGCAATGCCAA
CACGGAGCCCGTCGAGACCAGCACCACATCCGAGCCAGATGCCTCGCCAG
GCTGTCGGGCGCCGGATGTGCGCTTCACGATTGTCAAGCCGGAAGCGACG
ACGGAGCAGCCGCTGGCCAAATTCGAGACCACGCAGATCTACCTGCCGGA
GGACTTCACCACGGCGGATGTGGAGTTCGTGGACTCGGTGCCGCGTCACC
CCAACGAAAACCATGCGGCCGTAATCAATCCGTACTCGCTGGACCTGGGC
GACGACCACTTGCATGTGGGCGATGCGGCCGCCAGTTTGGTTGGCGACGA
TGATCTGGGTGACGAGGACGAGGACCACCACGGGGACCCGGAGGATAAGC
GCTTAAATGCCAATCGCAAGCAGGGCAAACGAAGGCGCGCGGGCTCAGGC
CGTCGGCGGAGGATTGAGAATGAAAATGGACAGACAGGCAGGGGTCGTGG
CAGTCGATATAAAGCGGCATGCCATTCTCCATGACACGGAAGCCTCACCG
GAAACGGATCGCTGGGCGGGCAGCAAGCTGGCAGCCGAAGGGGATGTGTA
CTATGTCCACATAGCCGATATCCTGAAGAGCCCGTGAGCCAAATCGTGAA
TTGAAATCGAAGCTGCACAAGCTCAAATGAAGGCCAGACTGAACAAGTGC
CTGGCGGAAGGTGGCAAGGAAGAATGCACAAGCTCCTCAAGATAAGCCCA
GAAGACGTCGTCGAGAAGGAACAGACCCTGAAGAAGGAAATAAGTCCCCA
AGACAACAGTCCAGGGAAAGTACCGAGAACGGACAACACCAAGGAGGACG
AACTGGAACTGGACCATCCGGAGACGCTGCTGCTCATCACGCCGCCGCGG
GACATTCAGCTGCAAAGCTCGACAGCGTGACGGAGCCCGCGAATGCGCGC
CGGCGCACACCGATTCAAGCGATCTCGGCCACTGCCCCGGATTCGAAATC
GGCCGACCGGAACGTAACGAATC
FMO06153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hig-RD | 4332 | CG2040-RD | 353..1425 | 6..1052 | 4420 | 95.9 | Plus |
| hig-RC | 4257 | CG2040-RC | 353..1425 | 6..1052 | 4420 | 95.9 | Plus |
| hig-RA | 4026 | CG2040-RA | 353..1425 | 6..1052 | 4420 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9234749..9235578 | 951..136 | 3185 | 96.4 | Minus |
| 2R | 25286936 | 2R | 9246765..9246897 | 138..6 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:52 has no hits.
FMO06153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:02 Download gff for
FMO06153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hig-RA | 348..1425 | 1..1052 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:05 Download gff for
FMO06153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hig-RC | 346..1423 | 1..1052 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:05 Download gff for
FMO06153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hig-RA | 348..1425 | 1..1052 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:05 Download gff for
FMO06153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9234636..9235575 | 139..1052 | 95 | <- | Minus |
| 2R | 9246765..9246901 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:02 Download gff for
FMO06153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5122141..5123080 | 139..1052 | 95 | <- | Minus |
| arm_2R | 5134270..5134406 | 1..138 | 97 | | Minus |
