FMO06154.5prime Sequence
1156 bp (1050 high quality bases) assembled on 2008-09-15
> FMO06154.5prime
CAGTCGACATGGAACTCCTTCCTCTGAAGTCGCCCCTCCCGATCCTGCTC
CTATGCCTAACCATTTCCACTTCGGTCAGCGGCTATCTGAACATTTTCAT
CAGCCACCACGAGGTGATGAAACTGATGGGACTCGAGGCGGACCTGTTCT
ATGTGCACGAGGGAGCCATCAACACATACGCAATGCACTTCACCGTCCCA
GTGCCCGCGGATGTCCATGAGCTGGAGTTTTCCTGGCAGAGTCTGATTGC
CTACCCACTGCCATACGCCATTAGTATTGAGTATAACAACGACCAGGAGG
CACTGGGCACGCCCACGTTGAGCATTCCGCACAAGGGTCTGGTGCCACAG
GAGATCGAGTCCTTCCTGGTTTACCTGCCCTGCACCGGAAATGCGAGCCT
ACAGATGCCCGTCAATGTCAACATGGTAGTACGGGCTCCTCCTCGATTCA
ACGACACCCGGCTCCACTTTAAGCGCAATAAGATCTGCGCCAAAGGCATC
TCACCTGAGCCCAATCAATCGCCGGCGCCAGCCCACGCACCCTCCCAAGG
ACCCGCCCTCCTCAGTGCCGCCGCCTGTGCTCTGGGTTTGGTTTTGGCCG
TGGGACTAGTGGCCAGCATGATGTATGTGAGGGCGCGCAAACAGCTTCGC
CAGGACTCGCTACACACCAGTTTCACCACCGCAGCTTATGGCAGCCACCA
AAACGTGTTCATCCGACTGGATCCCCTGGGAAGACCGCCGAGTGCCACGG
GATCCTATGCGACCATTGCCAGCCTCAACAAATACCCTGCGGACAGCAAA
AAAGTCGTGCAGCATATTCGACCGTTTCCGGAGCTCACCCACCCCCACGC
CGTATGCCACCGCCCTGCTGCCCATGAACCTTGAACAGACCGCAGAGACG
ATTTACTCGAAGCCAGAGTCGATCTGTCCCTCGAGGATTTCTACTACGCC
TCCTCGCAACTGACCAGCCTTGCAGCCTATCGACGCCGAAGAGCATCCGA
AGCAACGGCTATGGCAACTGCACAGCGGAAGTGGCAGCCTATGCCTTTTT
GGAGCATCCCCACCGGCAGCACCATCACATGGCCAGTCACGGGAAAGGTA
TCAACGCTGCAACAGATACCAGCGTCAGCCGGGTCTCACTCCAGAGAACT
GGTCAA
FMO06154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drl-2-RC | 6020 | CG3915-RC | 1209..2346 | 8..1134 | 5285 | 98.2 | Plus |
| Drl-2-RB | 4688 | CG3915-RB | 1209..2346 | 8..1134 | 5285 | 98.2 | Plus |
| CG13325-RB | 3610 | CG13325-RB | 753..874 | 8..129 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13067809..13068047 | 496..258 | 1195 | 100 | Minus |
| 2R | 25286936 | 2R | 13067573..13067743 | 664..494 | 855 | 100 | Minus |
| 2R | 25286936 | 2R | 13067352..13067511 | 825..665 | 755 | 99.4 | Minus |
| 2R | 25286936 | 2R | 13067135..13067277 | 965..824 | 665 | 99.3 | Minus |
| 2R | 25286936 | 2R | 13068109..13068237 | 257..129 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 13072577..13072699 | 130..8 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 13111521..13111643 | 8..130 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 13059283..13059414 | 1093..965 | 480 | 96.2 | Minus |
| 2R | 25286936 | 2R | 13116412..13116497 | 881..965 | 335 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:44 has no hits.
FMO06154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:18 Download gff for
FMO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drl-2-RB | 1200..2315 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:04 Download gff for
FMO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drl-2-RB | 1199..2314 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:06 Download gff for
FMO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drl-2-RB | 1200..2315 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:06 Download gff for
FMO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13059276..13059411 | 968..1097 | 94 | <- | Minus |
| 2R | 13067132..13067277 | 824..967 | 98 | <- | Minus |
| 2R | 13067354..13067511 | 665..823 | 99 | <- | Minus |
| 2R | 13067573..13067741 | 496..664 | 100 | <- | Minus |
| 2R | 13067810..13068047 | 258..495 | 100 | <- | Minus |
| 2R | 13068109..13068236 | 130..257 | 100 | <- | Minus |
| 2R | 13072578..13072702 | 1..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:18 Download gff for
FMO06154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8946781..8946916 | 968..1097 | 94 | <- | Minus |
| arm_2R | 8954637..8954782 | 824..967 | 98 | <- | Minus |
| arm_2R | 8954859..8955016 | 665..823 | 99 | <- | Minus |
| arm_2R | 8955078..8955246 | 496..664 | 100 | <- | Minus |
| arm_2R | 8955315..8955552 | 258..495 | 100 | <- | Minus |
| arm_2R | 8955614..8955741 | 130..257 | 100 | <- | Minus |
| arm_2R | 8960083..8960207 | 1..129 | 96 | | Minus |
