FMO06155.5prime Sequence
682 bp (570 high quality bases) assembled on 2008-09-15
> FMO06155.5prime
CAGTCGACATGGACGACTTGAGGGGATTCTTGAGGCAAGCGGGACAGGAG
TTCCTCAATGCAGCTGGTGAGGCTGCAATGGGAGCGGCCAAGGATGTGGT
CGGATCGGTGATCAACGAGATCTTCATCAAGAAGGAGGCCGACACCAAGA
GGGTTCTGCCCAGCATCAAGAATATGAGAGTTCTGGGAGAGAAGAGCTCG
AGCCTGGGACCCTATTCCGAGGTGCAGGACTATGAGACAATATTGAACAG
CTGCCTGGCCAGTGGTTCCCTTTTCGAAGATCCACTTTTTCCGGCTTCGA
ACGAGTCTCTTCAGTTTTCCCGGCGTCCAGATCGTCACATCGAATGGCTG
AGACCTCATGAAATTGCCGAGAATCCCCAGTTTTTTGTGGAGGGTTATTC
GCGTTTTGATGTTCAGCAAGGGCGAGCTTGGTGACTGTTGGCTCTTGGCT
GCCACAGCCAATTTAACTCAGGAATCCAACCTTTTCTTTCGGGTAATTCC
AGCGGAACAGAGTTTCGAGGAGAACTATTGCTGGTATCTTCCATTTCCGC
TTTTGCAGTATGGTAAATGGGGTGGTGTATCATTGATGACCGTTTGCCCA
CTTTATGGAAAGCTGATGTAATGCACTCCACGAAAAAACGAGTTCTGGAC
GCCCTGCTGAAAGCTTATGCCAACTTCTTGAT
FMO06155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CalpA-RC | 2889 | CG7563-RC | 138..811 | 9..673 | 3000 | 97.3 | Plus |
| CalpA-RA | 2301 | CG7563-RA | 138..811 | 9..673 | 3000 | 97.3 | Plus |
| CalpA-RB | 2797 | CG7563-RB | 46..719 | 9..673 | 3000 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19426630..19426807 | 183..360 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 19426045..19426218 | 9..182 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 19427013..19427144 | 437..568 | 565 | 98.5 | Plus |
| 2R | 25286936 | 2R | 19426868..19426944 | 360..437 | 340 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:52 has no hits.
FMO06155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:14 Download gff for
FMO06155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CalpA-RB | 39..730 | 1..682 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:08 Download gff for
FMO06155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CalpA-RC | 171..862 | 1..682 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:44 Download gff for
FMO06155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CalpA-RB | 39..730 | 1..682 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:44 Download gff for
FMO06155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19426038..19426218 | 1..182 | 97 | -> | Plus |
| 2R | 19426630..19426806 | 183..359 | 100 | -> | Plus |
| 2R | 19426868..19426944 | 360..437 | 98 | -> | Plus |
| 2R | 19427014..19427138 | 438..562 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:14 Download gff for
FMO06155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15314373..15314449 | 360..437 | 98 | -> | Plus |
| arm_2R | 15314519..15314643 | 438..562 | 98 | -> | Plus |
| arm_2R | 15313543..15313723 | 1..182 | 97 | -> | Plus |
| arm_2R | 15314135..15314311 | 183..359 | 100 | -> | Plus |
