FMO06156.5prime Sequence
1151 bp (1040 high quality bases) assembled on 2008-09-15
> FMO06156.5prime
CAGTCGACATGAGTAAACAAGGGAATAAAAGCAAGGATTCGGCTGCCGCA
TCCGCCACTTTAAAACGGATAAGCGAAAAGAAGTTGGAGGCCTTCACGGT
GGGCACCTTCTCCAAACGACAATTGTCCAAAAAAGAGCTCGAGGACCAGA
AAAAAAAGGAGGATGCAGCTGCTGCGGCACATGCCTTCAAAGAGTTCGTA
GAGACTTTCCAAGATGCACCCACCCCCTCCTCGAAAGTTTGGGTCAAAGC
CGGCACCTATGATGCAGGATCCCGGCGGGAGGACAAGTCGGAGAAGGGCA
AGCTATACAAGCCGGTCTCCAAGCTGATGGAAAAGAGCTCCTCGGACAAG
GTCGAGGATTACGCCAAGACCCTGGCCTCGGATCTCAAAAAGGACTCGGG
TCCATTGAAGAAGAAAAACCAGGAGAAGAAAAAGAGCAACTTGGAGCTGT
TCAAGGAGGAATTGAGACAGATTCAAGAGGAGCGTGAGGAGCGCCACAAG
TACAAGCACATGGCCTCAAGCCATTCCGCACCAGCACAGCAACCGGCTGC
ATCAGCTGCTCCTGTGCCCAGCAGCAGTGTCTCCACCACCTCCCAGAACT
CAAGCAGCTCAAAGGAGTCTGGTTCGTTTGACACGGGCGATCCAAATACC
ACAAACCTGTACCTGGGCAACCTGAACCCCAAGATATCCGAGCAGCAGCT
TATGGAAATCTTTGGGCGATACGGTCCCTTGGCCAGTATCAAGATCATGT
GGCCCCGCTCCGAAGAGGAGAAGCAAAGGGGACGCAATTGCGGCTTTGTG
GCCTACATGAGCCGCAAGGATGCGGAAAGGGCCCTAAAGACACTGAACGG
GCGCTACATCATGGGCTACGAGATGCGTCTAGGATGGGGAAAGACTGTGC
CCATAATGAATACGCCCATTTTACACCGCAAGCATTGCTTGAAATGACCC
TGCCTCCGCCTCCTTCAGATTGCCCTCATGCCCAACCTCCACCCAGTGAA
GCTGATGTGCTGCCCAGAAAAACCTACAAGGAGTTCATCAAGAGGAAAAG
AAGAATATGGGAGCGATACTTGCCAAATGCGTCGTAAGTCAATTACCCAG
GGAGCCTGTTTCCTTAATGTTATCCATCGATGATCGAGTCTTAATCCGCA
G
FMO06156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9346-RA | 2998 | CG9346-RA | 77..1217 | 9..1139 | 5185 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21012679..21013098 | 470..889 | 2100 | 100 | Plus |
| 2R | 25286936 | 2R | 21012335..21012622 | 183..470 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 21012162..21012279 | 66..183 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 21013157..21013334 | 888..1060 | 540 | 92.1 | Plus |
| 2R | 25286936 | 2R | 21012046..21012102 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:11 has no hits.
FMO06156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:24 Download gff for
FMO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9346-RA | 77..1229 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:03:09 Download gff for
FMO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9346-RA | 75..1227 | 9..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:42:53 Download gff for
FMO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9346-RA | 77..1229 | 9..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:42:53 Download gff for
FMO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21012679..21013097 | 470..888 | 100 | -> | Plus |
| 2R | 21012046..21012102 | 9..65 | 100 | -> | Plus |
| 2R | 21012162..21012278 | 66..182 | 100 | -> | Plus |
| 2R | 21012335..21012621 | 183..469 | 100 | -> | Plus |
| 2R | 21013158..21013339 | 889..1065 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:24 Download gff for
FMO06156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16899551..16899607 | 9..65 | 100 | -> | Plus |
| arm_2R | 16899667..16899783 | 66..182 | 100 | -> | Plus |
| arm_2R | 16899840..16900126 | 183..469 | 100 | -> | Plus |
| arm_2R | 16900184..16900602 | 470..888 | 100 | -> | Plus |
| arm_2R | 16900663..16900844 | 889..1065 | 92 | -> | Plus |
