FMO06158.5prime Sequence
760 bp (756 high quality bases) assembled on 2008-09-15
> FMO06158.5prime
CAGTCGACATGTTGTATAATGTGCCGTGTTATCAAAACTTCTCAACGCTG
GATTACTACAAAGTTAAACGTCCCAAGACAGACCACACGGATACACATGA
ACGCAACCGCCTCTGCAATCTGTCACAGCAGCAGCAGCAACAGCAACCCC
AGCAGCAACAGACGCATCAGCAGCAACAACAGCAGCAGCAGCAATCCCAT
CAGCAATCCCATTCCAGCACCGTGTTGGCCAGCAATGGACCCAGTAGCGC
CGGTGCCGGCATGGGTGTCGGTGTGGGCGGAGGCGGTGGCAGTGGAGGAG
GAGTAGGAGGCGGAGTTGGCCAGTGCAGTCCGCTGGGACTGCCGCCGCAG
AGCCAGCCGCTCCAGCCGACAATAGGATCGCTGGCCTCGCTGAGCGGTCA
CTACTCGAACGGTAATGCCAATCCGAATGTGAACTCGAGCAGCTGCAGTC
TGGCCACAGCATCCAGTTTTGCGCAGTCCGCCGGCAGCAGTTTCTCCACA
TATCAACAGGCTGGTGGCACCAGCGGTGGAGTTTCTGGCGAGGATGGCGT
GGTGGGCGGAGCAACTGTGATGTCGCACTGGACGCACGATGGCACTGGCT
CGAGTGCAGCGGTCAAGTCGGAGTCCCGCATCCCGGGCCAAGTGCACGCA
TCGCTGGACAACGGCTCGGTGGCCGGATCCAATTTGTACGGCTGCAGCTC
GGCCAGCAATCCGCTGGACAGAGGGAGCAGTGGCGGTTCAACTTCTTCGG
CAGTGGCAAC
FMO06158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eya-RB | 3320 | CG9554-RB | 475..1221 | 9..758 | 3630 | 99.2 | Plus |
| eya-RA | 3075 | CG9554-RA | 284..976 | 63..758 | 3375 | 99.3 | Plus |
| eya-RC | 2832 | CG9554-RC | 87..733 | 109..758 | 3145 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6529684..6530330 | 758..109 | 3070 | 99.2 | Minus |
| 2L | 23513712 | 2L | 6546447..6546502 | 64..9 | 265 | 98.2 | Minus |
| 2L | 23513712 | 2L | 6532906..6532952 | 109..63 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:53 has no hits.
FMO06158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:36 Download gff for
FMO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 475..1223 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:08 Download gff for
FMO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 471..1219 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:06 Download gff for
FMO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eya-RB | 475..1223 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:06 Download gff for
FMO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6529682..6530329 | 110..760 | 99 | <- | Minus |
| 2L | 6532906..6532952 | 63..109 | 100 | <- | Minus |
| 2L | 6546449..6546502 | 9..62 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:36 Download gff for
FMO06158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6532906..6532952 | 63..109 | 100 | <- | Minus |
| arm_2L | 6546449..6546502 | 9..62 | 98 | | Minus |
| arm_2L | 6529682..6530329 | 110..760 | 99 | <- | Minus |
