FMO06159.5prime Sequence
1132 bp (931 high quality bases) assembled on 2008-09-15
> FMO06159.5prime
CAGTCGACATGCGAGAGAAGGAAAGGGTTCAGAACACGCCCCCACTAACC
AAGCAGCCGCGAAAGAGACGAATAGCCCCACAACCTCCACCGAAACCCCC
ACCAAAACCGAGAAAAATTCGTACTGAGAAAACCACCAACGATGACCACT
GTGCGTTCATTGAGCAGCTCTTTTTCGAAACAACTGAGGCAAAACCATCG
GCTACAGTGGTTGCGGGAGTCACAGGACCTGCAGGACCTTTGGGGGCTAC
AACATCCTCGCCGTCGCTGGAAACGCAATCAACTGTTATAATTTCGTTTA
AATCATCTCAAACACCTGTGCAGTCTCAAACGAATTCTGCAGCCTCCGAA
AATGTTGAGGATGACACAGCGCCCCTGCCACTTCCACCGCCGCCCCCCGG
CTTCGGTACGCCCACCACGCCCCTTTTGTCAAGCAATGTGCTGAAGAAGG
TCGCCAGCTTCACGGTCGAGAAGTCTTCGGCGGGCAATAATAGCTCGAAT
CCTCCGAATTTGTGCCCCACCAGTGACGAGACCACCCTCTTGGCCACACC
ATGTTCTTCATCGCTGACGGTGGCAACCCTGCCGCCCGAAATCGCCGTGG
GCGCAGCGGCGGGGGGCGTGGCCGGGGGTGCTGGTTCGCGACGCGGCTCA
TCTTATGTACCGGAAAAGTTAAGCTTCGCTGCATATGAAAAGTTCGAAGG
TCAAATGCTAATAAAATGGCTAATCTCAACGATGCAAAGCAATCCGAAGA
GTTCCAGCGGGTGATGCTAATCAGGAATATTTTAATACACTGGCGTTGCA
GTTCTGCAATAATCTCAAATATTGTCGGCGTCCTTAAAGCAGATCTCCAT
GAGCACTTGGATTGCGGATTAGCCCTATGAAATGTACCAATGGACGCACA
CGGAGCACCAACCACCTCATTGCCCCTGAACCTTGCAAAGCTGGACAAGG
TGGCGGCTTGGCCATTTTCCCACACACCATCCGGAATTCGAGCGTTGGAA
TCCGCATCCCTGGCGTCCTTGGGACAGTGGGGTGGCGGGTTCCTTGCAAC
CATTGCCACGCATCCAAAGCCCTATCGAAATCGAAAACCCTGCAACGAAT
CTAGAAAGCTCTACTCAAACTGCAGACCTGGC
FMO06159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capu-RH | 3713 | CG3399-RH | 394..1487 | 9..1094 | 4895 | 97.3 | Plus |
capu-RB | 3629 | CG3399-RB | 310..1403 | 9..1094 | 4895 | 97.3 | Plus |
capu-RD | 4305 | CG3399-RD | 986..2079 | 9..1094 | 4895 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3884034..3884524 | 701..211 | 2440 | 99.8 | Minus |
2L | 23513712 | 2L | 3889430..3889638 | 217..9 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 3878899..3879069 | 870..698 | 640 | 96.6 | Minus |
2L | 23513712 | 2L | 3875112..3875304 | 1059..871 | 605 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:58 has no hits.
FMO06159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:44 Download gff for
FMO06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capu-RD | 986..2086 | 9..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:08 Download gff for
FMO06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capu-RB | 310..1410 | 9..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:48 Download gff for
FMO06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capu-RD | 986..2086 | 9..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:48 Download gff for
FMO06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3878895..3879067 | 700..872 | 95 | <- | Minus |
2L | 3884036..3884518 | 217..699 | 100 | <- | Minus |
2L | 3889431..3889638 | 9..216 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:44 Download gff for
FMO06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3889431..3889638 | 9..216 | 100 | | Minus |
arm_2L | 3878895..3879067 | 700..872 | 95 | <- | Minus |
arm_2L | 3884036..3884518 | 217..699 | 100 | <- | Minus |